myRT

myRT report for GCA_002741315.1_ASM274131v1

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Seq: CP024257.1 Escherichia coli O25:H16 strain F5505-C1 chromosome, complete genome (4886938 bp)
Overview 1 RT 1: 2291071-2294546 bp 2 RT 2: 4471796-4474710 bp 3 RT 3: 4484835-4488724 bp Neighborhood of RT #1 [2291071, 2294611] HTH_23 InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [4471796, 4474775] RVT-GII GIIM PHA02517 Neighborhood of RT #3 [4484835, 4488729] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 2291071-2291592 bp Feature: domain Description: HTH_23 Location: 2291101-2291212 bp Feature: domain Description: HTH_23 Location: 2291 1 01 -2291 21 2 bp Feature: domain Description: InsE Location: 2291344-2291554 bp Feature: domain Description: InsE Location: 2291 344-2291 554 bp Feature: gene Location: 2291622-2291948 bp Feature: domain Description: PHA02517 Location: 2291625-2291901 bp Feature: domain Description: PHA0251 7 Location: 2291 625-2291 901 bp Feature: gene Location: 2292071-2293594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2292344-2293076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2292344-2293076 bp Feature: domain Description: GIIM Note: maturase Location: 2293151-2293349 bp Feature: domain Description: GIIM Note: maturase Location: 22931 51 -2293349 bp Feature: gene Location: 2293548-2293973 bp Feature: gene Location: 2294186-2294611 bp Feature: domain Description: PHA02517 Location: 2294207-2294546 bp Feature: domain Description: PHA0251 7 Location: 2294207-2294546 bp Feature: gene Location: 4471796-4471939 bp Feature: gene Location: 4471964-4472167 bp Feature: gene Location: 4472235-4473758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472508-4473240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472508-4473240 bp Feature: domain Description: GIIM Note: maturase Location: 4473315-4473513 bp Feature: domain Description: GIIM Note: maturase Location: 447331 5-447351 3 bp Feature: gene Location: 4473712-4474137 bp Feature: gene Location: 4474350-4474775 bp Feature: domain Description: PHA02517 Location: 4474374-4474710 bp Feature: domain Description: PHA0251 7 Location: 4474374-447471 0 bp Feature: gene Location: 4484835-4485188 bp Feature: gene Location: 4485547-4485744 bp Feature: gene Location: 4485913-4486347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4486105-4486321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44861 05-4486321 bp Feature: gene Location: 4486320-4487171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4486323-4486731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4486323-4486731 bp Feature: domain Description: GIIM Note: maturase Location: 4486779-4487001 bp Feature: domain Description: GIIM Note: maturase Location: 4486779-4487001 bp Feature: gene Location: 4487349-4487567 bp Feature: gene Location: 4487698-4488729 bp Feature: domain Description: LacI Location: 4487740-4487875 bp Feature: domain Description: LacI Location: 4487740-4487875 bp Feature: domain Description: PBP1_GntR Location: 4487914-4488724 bp Feature: domain Description: PBP1 _GntR Location: 448791 4-4488724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: CP024258.1 Escherichia coli O25:H16 strain F5505-C1 plasmid unnamed1, complete sequence (96607 bp)
Overview 1 RT 1: 69217-72307 bp Neighborhood of RT #1 [69217, 72372] PHA02517 group_II_RT_mat RVT-GII RVT-GII PHA02517 Feature: gene Location: 69217-69663 bp Feature: domain Description: PHA02517 Location: 69220-69661 bp Feature: domain Description: PHA02 517 Location: 692 2 0-69661 bp Feature: gene Location: 69780-70352 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 69786-70098 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 69786-70098 bp Feature: gene Location: 70367-70936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70370-70733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70370-70733 bp Feature: gene Location: 70861-71301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71134-71242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71134-712 42 bp Feature: gene Location: 71255-71680 bp Feature: gene Location: 71893-72372 bp Feature: domain Description: PHA02517 Location: 71953-72307 bp Feature: domain Description: PHA02 517 Location: 71953-72 307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), group_II_RT_mat (TIGR04416), RVT-GII

Seq: CP024259.1 Escherichia coli O25:H16 strain F5505-C1 plasmid unnamed2, complete sequence (94817 bp)
Overview 1 RT 1: 12675-15732 bp Neighborhood of RT #1 [12675, 15869] COG4584 RVT-GII PHA02517 SR_ResInv Feature: gene Location: 12675-13697 bp Feature: domain Description: COG4584 Location: 12678-13548 bp Feature: domain Description: COG4584 Location: 12678-13 548 bp Feature: gene Location: 13711-13908 bp Feature: gene Location: 13955-14245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14024-14207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14024-14207 bp Feature: gene Location: 14500-14799 bp Feature: domain Description: PHA02517 Location: 14650-14761 bp Feature: domain Description: PHA02517 Location: 14650-14761 bp Feature: gene Location: 15345-15869 bp Feature: domain Description: SR_ResInv Location: 15357-15732 bp Feature: domain Description: SR_ResInv Location: 153 57-1573 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), SR_ResInv (cd03768)