myRT

myRT report for GCA_002741355.1_ASM274135v1

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Seq: CP024278.1 Escherichia coli strain ATCC 43896 chromosome, complete genome (5088038 bp)
Overview 1 RT 1: 485419-488816 bp 2 RT 2: 582265-591322 bp 3 RT 3: 1343498-1351309 bp 4 RT 4: 1482029-1485420 bp 5 RT 5: 2610868-2613782 bp Neighborhood of RT #1 [485419, 488816] PHA02517 RVT-GII GIIM Neighborhood of RT #2 [582265, 591327] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Tra5 InsE Neighborhood of RT #3 [1343498, 1351314] Phage_GPA RVT-AbiP2 RVT-Retrons Q Neighborhood of RT #4 [1482029, 1485485] LZ_Tnp_IS66 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [2610868, 2613847] RVT-GII GIIM PHA02517 Feature: gene Location: 485419-485634 bp Feature: gene Location: 485689-486129 bp Feature: domain Description: PHA02517 Location: 485692-486100 bp Feature: domain Description: PHA0251 7 Location: 485692-4861 00 bp Feature: gene Location: 486258-487781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486531-487263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486531 -487263 bp Feature: domain Description: GIIM Note: maturase Location: 487338-487536 bp Feature: domain Description: GIIM Note: maturase Location: 487338-487536 bp Feature: gene Location: 488075-488446 bp Feature: gene Location: 488517-488816 bp Feature: gene Location: 582265-584847 bp Feature: domain Description: mutS1 Location: 582316-584836 bp Feature: domain Description: mutS1 Location: 58231 6-584836 bp Feature: gene Location: 584992-586452 bp Feature: domain Description: INT_Rci_Hp1_C Location: 585367-585574 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 585367-585574 bp Feature: domain Description: INT_P4_C Location: 585793-586330 bp Feature: domain Description: INT_P4_C Location: 585793-586330 bp Feature: gene Location: 587708-589726 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 588278-588728 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 588278-588728 bp Feature: gene Location: 590165-591031 bp Feature: domain Description: Tra5 Location: 590276-591026 bp Feature: domain Description: Tra5 Location: 590276-591 026 bp Feature: gene Location: 591028-591327 bp Feature: domain Description: InsE Location: 591055-591322 bp Feature: domain Description: InsE Location: 591 055-591 322 bp Feature: gene Location: 1343498-1345774 bp Feature: domain Description: Phage_GPA Location: 1343897-1344884 bp Feature: domain Description: Phage_GPA Location: 1 343897-1 344884 bp Feature: gene Location: 1345836-1346096 bp Feature: gene Location: 1346262-1347806 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1346679-1347132 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 346679-1 3471 32 bp Feature: gene Location: 1348001-1348147 bp Feature: gene Location: 1348149-1348289 bp Feature: gene Location: 1348357-1349547 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1348507-1349089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 348507-1 349089 bp Feature: gene Location: 1349722-1350252 bp Feature: gene Location: 1350295-1351314 bp Feature: domain Description: Q Location: 1350298-1351309 bp Feature: domain Description: Q Location: 1 350298-1 351 309 bp Feature: gene Location: 1482029-1482325 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1482209-1482275 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 482209-1 482275 bp Feature: gene Location: 1482328-1482774 bp Feature: domain Description: PHA02517 Location: 1482331-1482772 bp Feature: domain Description: PHA0251 7 Location: 1 482331 -1 482772 bp Feature: gene Location: 1482891-1484414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483164-1483896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4831 64-1 483896 bp Feature: domain Description: GIIM Note: maturase Location: 1483971-1484169 bp Feature: domain Description: GIIM Note: maturase Location: 1 483971 -1 4841 69 bp Feature: gene Location: 1484368-1484793 bp Feature: gene Location: 1485006-1485485 bp Feature: domain Description: PHA02517 Location: 1485066-1485420 bp Feature: domain Description: PHA0251 7 Location: 1 485066-1 485420 bp Feature: gene Location: 2610868-2611011 bp Feature: gene Location: 2611036-2611239 bp Feature: gene Location: 2611307-2612830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2611580-2612312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 1 580-261 231 2 bp Feature: domain Description: GIIM Note: maturase Location: 2612387-2612585 bp Feature: domain Description: GIIM Note: maturase Location: 261 2387-261 2585 bp Feature: gene Location: 2612784-2613209 bp Feature: gene Location: 2613422-2613847 bp Feature: domain Description: PHA02517 Location: 2613446-2613782 bp Feature: domain Description: PHA0251 7 Location: 261 3446-261 3782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8, Tra5 (COG2801), InsE (COG2963), Phage_GPA (pfam05840)
RVT-AbiP2, RVT-Retrons, Q (PHA02536), LZ_Tnp_IS66 (pfam13007)

Seq: CP024280.1 Escherichia coli strain ATCC 43896 plasmid unnamed2 (52655 bp)
Overview 1 RT 1: 14952-18618 bp Neighborhood of RT #1 [14952, 18683] HTH_23 InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 14952-15473 bp Feature: domain Description: HTH_23 Location: 14982-15093 bp Feature: domain Description: HTH_2 3 Location: 14982 -15093 bp Feature: domain Description: InsE Location: 15225-15435 bp Feature: domain Description: InsE Location: 152 2 5-15435 bp Feature: gene Location: 15553-15972 bp Feature: domain Description: PHA02517 Location: 15556-15970 bp Feature: domain Description: PHA02 517 Location: 15556-15970 bp Feature: gene Location: 16089-17612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16362-17094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16362 -17094 bp Feature: domain Description: GIIM Note: maturase Location: 17169-17367 bp Feature: domain Description: GIIM Note: maturase Location: 17169-17367 bp Feature: gene Location: 17566-17991 bp Feature: gene Location: 18204-18683 bp Feature: domain Description: PHA02517 Location: 18264-18618 bp Feature: domain Description: PHA02 517 Location: 182 64-18618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)