myRT

myRT report for GCA_002741455.1_ASM274145v1

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Seq: CP024243.1 Escherichia coli O128:H27 strain 90-9281 chromosome, complete genome (4978613 bp)
Overview 1 RT 1: 996504-1000391 bp 2 RT 2: 1449662-1452576 bp 3 RT 3: 1651536-1655439 bp Neighborhood of RT #1 [996504, 1000474] HTH_XRE RVT-Retrons Resolvase Neighborhood of RT #2 [1449662, 1452641] RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1651536, 1655474] YkfC InsG RVT-GII GIIM PHA02517 T6SS_VipA Feature: gene Location: 996504-996968 bp Feature: domain Description: HTH_XRE Location: 996534-996702 bp Feature: domain Description: HTH_XRE Location: 996534-996702 bp Feature: gene Location: 997208-997705 bp Feature: gene Location: 997844-999550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 997994-998591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 997994-998591 bp Feature: gene Location: 999587-999796 bp Feature: gene Location: 999953-1000474 bp Feature: domain Description: Resolvase Location: 999974-1000391 bp Feature: domain Description: Resolvase Location: 999974-1 000391 bp Feature: gene Location: 1449662-1449805 bp Feature: gene Location: 1449830-1450033 bp Feature: gene Location: 1450101-1451624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1450374-1451106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 450374-1 451 1 06 bp Feature: domain Description: GIIM Note: maturase Location: 1451181-1451379 bp Feature: domain Description: GIIM Note: maturase Location: 1 451 1 81 -1 451 379 bp Feature: gene Location: 1451578-1452003 bp Feature: gene Location: 1452216-1452641 bp Feature: domain Description: PHA02517 Location: 1452240-1452576 bp Feature: domain Description: PHA0251 7 Location: 1 452240-1 452576 bp Feature: gene Location: 1651536-1651691 bp Feature: domain Description: YkfC Location: 1651545-1651686 bp Feature: domain Description: YkfC Location: 1 651 545-1 651 686 bp Feature: gene Location: 1651695-1652969 bp Feature: domain Description: InsG Location: 1651698-1652739 bp Feature: domain Description: InsG Location: 1 651 698-1 652739 bp Feature: gene Location: 1653062-1654408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653158-1653890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6531 58-1 653890 bp Feature: domain Description: GIIM Note: maturase Location: 1653965-1654163 bp Feature: domain Description: GIIM Note: maturase Location: 1 653965-1 6541 63 bp Feature: gene Location: 1654585-1654971 bp Feature: domain Description: PHA02517 Location: 1654588-1654969 bp Feature: domain Description: PHA0251 7 Location: 1 654588-1 654969 bp Feature: gene Location: 1654974-1655474 bp Feature: domain Description: T6SS_VipA Location: 1654995-1655439 bp Feature: domain Description: T6SS_VipA Location: 1 654995-1 655439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), YkfC (COG3344), InsG (COG3385), T6SS_VipA (pfam05591)