myRT

myRT report for GCA_002741515.1_ASM274151v1

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Seq: CP024266.1 Escherichia coli O6:H16 strain F6699 chromosome, complete genome (4881899 bp)
Overview 1 RT 1: 376050-379022 bp 2 RT 2: 397159-402176 bp 3 RT 3: 1415299-1420641 bp 4 RT 4: 3111958-3115170 bp Neighborhood of RT #1 [376050, 379087] RVT-GII GIIM PHA02517 Neighborhood of RT #2 [397159, 402220] RVT-UG5 nitrilase PRK09692 Neighborhood of RT #3 [1415299, 1420646] PRK14987 gntK RVT_N RVT-GII GIIM HNHc PRK10472 Neighborhood of RT #4 [3111958, 3115235] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 376050-376193 bp Feature: gene Location: 376218-376403 bp Feature: gene Location: 376490-378013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376763-377495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376763-377495 bp Feature: domain Description: GIIM Note: maturase Location: 377570-377768 bp Feature: domain Description: GIIM Note: maturase Location: 377570-377768 bp Feature: gene Location: 377967-378392 bp Feature: gene Location: 378605-379087 bp Feature: domain Description: PHA02517 Location: 378668-379022 bp Feature: domain Description: PHA0251 7 Location: 378668-379022 bp Feature: gene Location: 397159-397302 bp Feature: gene Location: 397308-397997 bp Feature: gene Location: 397994-400678 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 398276-398804 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 398276-398804 bp Feature: domain Description: nitrilase Location: 400016-400598 bp Feature: domain Description: nitrilase Location: 40001 6-400598 bp Feature: gene Location: 400647-400871 bp Feature: gene Location: 400964-402220 bp Feature: domain Description: PRK09692 Location: 400973-402176 bp Feature: domain Description: PRK09692 Location: 400973-4021 76 bp Feature: gene Location: 1415299-1416294 bp Feature: domain Description: PRK14987 Location: 1415302-1416292 bp Feature: domain Description: PRK1 4987 Location: 1 41 5302-1 41 6292 bp Feature: gene Location: 1416433-1416960 bp Feature: domain Description: gntK Location: 1416475-1416955 bp Feature: domain Description: gntK Location: 1 41 6475-1 41 6955 bp Feature: gene Location: 1417221-1418888 bp Feature: domain Description: RVT_N Location: 1417269-1417506 bp Feature: domain Description: RVT_N Location: 1 41 7269-1 41 7506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417557-1418199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 7557-1 41 81 99 bp Feature: domain Description: GIIM Note: maturase Location: 1418250-1418484 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 8250-1 41 8484 bp Feature: domain Description: HNHc Note: nucleases Location: 1418694-1418853 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 8694-1 41 8853 bp Feature: gene Location: 1419007-1419303 bp Feature: gene Location: 1419525-1420646 bp Feature: domain Description: PRK10472 Location: 1419528-1420641 bp Feature: domain Description: PRK1 0472 Location: 1 41 9528-1 420641 bp Feature: gene Location: 3111958-3112128 bp Feature: gene Location: 3112156-3112572 bp Feature: domain Description: PHA02517 Location: 3112159-3112564 bp Feature: domain Description: PHA0251 7 Location: 31 1 21 59-31 1 2564 bp Feature: gene Location: 3112695-3114218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3112968-3113700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 2968-31 1 3700 bp Feature: domain Description: GIIM Note: maturase Location: 3113775-3113973 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 3775-31 1 3973 bp Feature: gene Location: 3114172-3114597 bp Feature: gene Location: 3114810-3115235 bp Feature: domain Description: PHA02517 Location: 3114831-3115170 bp Feature: domain Description: PHA0251 7 Location: 31 1 4831 -31 1 51 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional), PRK14987 (HTH-type transcriptional regulator GntR), gntK (PRK11545), RVT_N (pfam13655), HNHc (smart00507)
PRK10472 (low affinity gluconate transporter; Provisional)

Seq: CP024268.1 Escherichia coli O6:H16 strain F6699 plasmid unnamed2 (95350 bp)
Overview 1 RT 1: 83793-87853 bp Neighborhood of RT #1 [83793, 88002] InsE PHA02517 RVT-GII GIIM PRK09183 COG4584 Feature: gene Location: 83793-84011 bp Feature: domain Description: InsE Location: 83796-83973 bp Feature: domain Description: InsE Location: 83796-83973 bp Feature: gene Location: 84118-84597 bp Feature: domain Description: PHA02517 Location: 84178-84532 bp Feature: domain Description: PHA02 517 Location: 84178-84532 bp Feature: gene Location: 85189-86712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85462-86194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85462 -86194 bp Feature: domain Description: GIIM Note: maturase Location: 86269-86467 bp Feature: domain Description: GIIM Note: maturase Location: 862 69-86467 bp Feature: gene Location: 86906-87685 bp Feature: domain Description: PRK09183 Location: 86912-87683 bp Feature: domain Description: PRK09183 Location: 86912 -87683 bp Feature: gene Location: 87685-88002 bp Feature: domain Description: COG4584 Location: 87688-87853 bp Feature: domain Description: COG4584 Location: 87688-87853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )