myRT

myRT report for GCA_002741635.1_ASM274163v1

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Seq: CP024473.1 Shigella flexneri 7b strain 94-3007 chromosome, complete genome (4533699 bp)
Overview 1 RT 1: 3020053-3023692 bp 2 RT 2: 4282577-4287901 bp Neighborhood of RT #1 [3020053, 3023859] InsE PHA02517 RVT-GII GIIM COG2085 Neighborhood of RT #2 [4282577, 4288017] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 3020053-3020355 bp Feature: domain Description: InsE Location: 3020092-3020341 bp Feature: domain Description: InsE Location: 3020092-3020341 bp Feature: gene Location: 3020411-3020836 bp Feature: domain Description: PHA02517 Location: 3020435-3020771 bp Feature: domain Description: PHA0251 7 Location: 3020435-3020771 bp Feature: gene Location: 3021428-3022951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3021701-3022433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3021 701 -3022433 bp Feature: domain Description: GIIM Note: maturase Location: 3022508-3022706 bp Feature: domain Description: GIIM Note: maturase Location: 3022508-3022706 bp Feature: gene Location: 3023146-3023280 bp Feature: gene Location: 3023446-3023859 bp Feature: domain Description: COG2085 Location: 3023545-3023692 bp Feature: domain Description: COG2085 Location: 3023545-3023692 bp Feature: gene Location: 4282577-4283728 bp Feature: domain Description: HTH_38 Location: 4282586-4282700 bp Feature: domain Description: HTH_38 Location: 4282586-4282700 bp Feature: domain Description: Tra8 Location: 4282736-4283717 bp Feature: domain Description: Tra8 Location: 4282736-428371 7 bp Feature: gene Location: 4283859-4284284 bp Feature: domain Description: PHA02517 Location: 4283883-4284219 bp Feature: domain Description: PHA0251 7 Location: 4283883-428421 9 bp Feature: gene Location: 4284876-4286399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4285149-4285881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42851 49-4285881 bp Feature: domain Description: GIIM Note: maturase Location: 4285956-4286154 bp Feature: domain Description: GIIM Note: maturase Location: 4285956-42861 54 bp Feature: gene Location: 4286564-4286722 bp Feature: domain Description: PHA02517 Location: 4286567-4286675 bp Feature: domain Description: PHA0251 7 Location: 4286567-4286675 bp Feature: gene Location: 4286941-4288017 bp Feature: domain Description: COG3547 Location: 4286980-4287901 bp Feature: domain Description: COG3547 Location: 4286980-4287901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme ), HTH_38 (pfam13936), Tra8 (COG2826), COG3547 (Transposase )

Seq: CP024475.1 Shigella flexneri 7b strain 94-3007 plasmid unnamed2, complete sequence (82833 bp)
Overview 1 RT 1: 30122-33754 bp Neighborhood of RT #1 [30122, 33759] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 30122-30262 bp Feature: gene Location: 30596-30805 bp Feature: gene Location: 30940-32841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31207-32038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 07-32 038 bp Feature: domain Description: Intron_maturas2 Location: 32152-32410 bp Feature: domain Description: Intron_maturas2 Location: 32 152 -32 410 bp Feature: domain Description: HNHc Note: nucleases Location: 32584-32746 bp Feature: domain Description: HNHc Note: nucleases Location: 32 584-32 746 bp Feature: gene Location: 33036-33470 bp Feature: domain Description: PRK13732 Location: 33042-33468 bp Feature: domain Description: PRK13732 Location: 33042 -33468 bp Feature: gene Location: 33526-33759 bp Feature: domain Description: DUF905 Location: 33556-33754 bp Feature: domain Description: DUF905 Location: 33556-33754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP024476.1 Shigella flexneri 7b strain 94-3007 plasmid unnamed3, complete sequence (220282 bp)
Overview 1 RT 1: 32760-36087 bp 2 RT 2: 125428-128563 bp Neighborhood of RT #1 [32760, 36101] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [125428, 128563] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 32760-33407 bp Feature: domain Description: PHA02517 Location: 32763-33405 bp Feature: domain Description: PHA02517 Location: 3 2763 -3 3 405 bp Feature: gene Location: 33501-33632 bp Feature: domain Description: DDE_Tnp_IS66 Location: 33513-33606 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 3 513 -3 3 606 bp Feature: gene Location: 34110-35327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34296-34950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4296-3 4950 bp Feature: domain Description: GIIM Note: maturase Location: 35028-35250 bp Feature: domain Description: GIIM Note: maturase Location: 3 5028-3 5250 bp Feature: gene Location: 35443-35589 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 35455-35566 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 5455-3 5566 bp Feature: gene Location: 35616-36101 bp Feature: domain Description: COG3547 Location: 35634-36087 bp Feature: domain Description: COG3 547 Location: 3 563 4-3 6087 bp Feature: gene Location: 125428-126177 bp Feature: domain Description: PAP2_acid_phosphatase Location: 125503-126157 bp Feature: domain Description: PAP2_acid_phosphatase Location: 125503 -126157 bp Feature: gene Location: 126573-126773 bp Feature: domain Description: Tra5 Location: 126582-126756 bp Feature: domain Description: Tra5 Location: 126582-126756 bp Feature: gene Location: 126786-127589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127086-127581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127086-127581 bp Feature: gene Location: 127642-127968 bp Feature: domain Description: GIIM Note: maturase Location: 127675-127894 bp Feature: domain Description: GIIM Note: maturase Location: 127675-127894 bp Feature: gene Location: 128321-128563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801)