myRT

myRT report for GCA_002752675.1_ASM275267v1

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Seq: CP024608.1 Massilia sp. B2 chromosome (7442939 bp)
Overview 1 RT 1: 656098-661178 bp 2 RT 2: 1356726-1363118 bp 3 RT 3: 1982845-1988953 bp 4 RT 4: 5204911-5212954 bp 5 RT 5: 7245808-7251098 bp Neighborhood of RT #1 [656098, 661178] MFS_FucP_MFSD4_like PurR RVT-Retrons Neighborhood of RT #2 [1356726, 1365640] COG5421 KOG4691 RVT-Retrons WGR_DNA_ligase HEAT_2 Neighborhood of RT #3 [1982845, 1988953] ligand_gated_channel RVT-GII GIIM Neighborhood of RT #4 [5204911, 5212962] VIT sorted_by_XrtN TPR YfaP RVT-GII GIIM ligD Neighborhood of RT #5 [7245808, 7251100] Peptidases_S8_PCSK9_ProteinaseK_like Inhibitor_I9 RVT-GII GIIM PRK07006 Feature: gene Location: 656098-657327 bp Ori: ATQ73598.1 Feature: domain Description: MFS_FucP_MFSD4_like Location: 656131-657301 bp Feature: domain Description: MFS_FucP_MFSD4_like Location: 6561 31 -657301 bp Feature: gene Location: 657379-658389 bp Ori: ATQ73599.1 Feature: domain Description: PurR Location: 657385-658375 bp Feature: domain Description: PurR Location: 657385-658375 bp Feature: gene Location: 658638-659981 bp Ori: ATQ73600.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 659097-659736 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 659097-659736 bp Feature: gene Location: 660059-660589 bp Feature: gene Location: 660750-661178 bp Feature: gene Location: 1356726-1358420 bp Ori: ATQ74139.1 Feature: domain Description: COG5421 Location: 1357332-1358226 bp Feature: domain Description: COG5421 Location: 1 357332-1 358226 bp Feature: gene Location: 1358636-1360564 bp Ori: ATQ74140.1 Feature: domain Description: KOG4691 Location: 1358858-1359089 bp Feature: domain Description: KOG4691 Location: 1 358858-1 359089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1359200-1359815 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 359200-1 35981 5 bp Feature: gene Location: 1360929-1362584 bp Feature: gene Location: 1362581-1365640 bp Ori: ATQ74142.1 Feature: domain Description: WGR_DNA_ligase Location: 1362596-1362776 bp Feature: domain Description: WGR_DNA_ligase Location: 1 362596-1 362776 bp Feature: domain Description: HEAT_2 Location: 1362908-1363118 bp Feature: domain Description: HEAT_2 Location: 1 362908-1 3631 1 8 bp Feature: gene Location: 1982845-1985706 bp Ori: ATQ74609.1 Feature: domain Description: ligand_gated_channel Location: 1983028-1985701 bp Feature: domain Description: ligand_gated_channel Location: 1 983028-1 985701 bp Feature: gene Location: 1985814-1986142 bp Feature: gene Location: 1986214-1987581 bp Ori: ATQ74610.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986547-1987162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 986547-1 9871 62 bp Feature: domain Description: GIIM Note: maturase Location: 1987219-1987423 bp Feature: domain Description: GIIM Note: maturase Location: 1 98721 9-1 987423 bp Feature: gene Location: 1987726-1988247 bp Feature: gene Location: 1988249-1988953 bp Feature: gene Location: 5204911-5207838 bp Ori: ATQ76950.1 Feature: domain Description: VIT Location: 5205094-5205424 bp Feature: domain Description: VIT Location: 5205094-5205424 bp Feature: domain Description: sorted_by_XrtN Location: 5206537-5206597 bp Feature: domain Description: sorted_by_XrtN Location: 5206537-5206597 bp Feature: domain Description: TPR Location: 5207062-5207335 bp Feature: domain Description: TPR Location: 5207062-5207335 bp Feature: domain Description: YfaP Location: 5207461-5207815 bp Feature: domain Description: YfaP Location: 5207461 -520781 5 bp Feature: gene Location: 5207984-5208312 bp Feature: gene Location: 5208384-5209751 bp Ori: ATQ76951.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5208720-5209332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5208720-5209332 bp Feature: domain Description: GIIM Note: maturase Location: 5209389-5209593 bp Feature: domain Description: GIIM Note: maturase Location: 5209389-5209593 bp Feature: gene Location: 5209854-5210198 bp Feature: gene Location: 5210386-5212962 bp Ori: ATQ76953.1 Gene: ligD Feature: domain Description: ligD Location: 5210395-5212954 bp Feature: domain Description: ligD Location: 521 0395-521 2954 bp Feature: gene Location: 7245808-7247082 bp Ori: ATQ78479.1 Feature: domain Description: Peptidases_S8_PCSK9_ProteinaseK_like Location: 7245985-7246378 bp Feature: domain Description: Peptidases_S8_PCSK9_ProteinaseK_like Location: 7245985-7246378 bp Feature: gene Location: 7247079-7247639 bp Ori: ATQ78480.1 Feature: domain Description: Inhibitor_I9 Location: 7247112-7247289 bp Feature: domain Description: Inhibitor_I9 Location: 72471 1 2-7247289 bp Feature: gene Location: 7248162-7249379 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7248822-7248960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7248822-7248960 bp Feature: domain Description: GIIM Note: maturase Location: 7249017-7249221 bp Feature: domain Description: GIIM Note: maturase Location: 724901 7-7249221 bp Feature: gene Location: 7249451-7249779 bp Feature: gene Location: 7249847-7251100 bp Ori: ATQ79207.1 Feature: domain Description: PRK07006 Location: 7249874-7251098 bp Feature: domain Description: PRK07006 Location: 7249874-7251 098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_FucP_MFSD4_like (cd17333), PurR (COG1609), RVT-Retrons, COG5421 (Transposase ), KOG4691 (KOG4691, Uncharacterized conserved protein ), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), ligand_gated_channel (cd01347), RVT-GII, GIIM (pfam08388)
VIT (smart00609), sorted_by_XrtN (TIGR04477), TPR (smart00028), YfaP (COG4676), ligD (PRK09633), Peptidases_S8_PCSK9_ProteinaseK_like (cd04077), Inhibitor_I9 (pfam05922), PRK07006 (isocitrate dehydrogenase; Reviewed)