myRT

myRT report for GCA_002753995.1_ASM275399v1

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Seq: CP024478.1 Pseudomonas sp. HLS-6 chromosome, complete genome (5276694 bp)
Overview 1 RT 1: 2061179-2065271 bp 2 RT 2: 2320234-2324100 bp 3 RT 3: 3292791-3296161 bp 4 RT 4: 3822487-3826294 bp 5 RT 5: 4606481-4610867 bp 6 RT 6: 4902793-4911088 bp Neighborhood of RT #1 [2061179, 2065288] DUF772 RVT-GII GIIM IS5 Inovirus_Gp2 Neighborhood of RT #2 [2320234, 2324117] Dcm Dcm RVT-DGRs Avd_like DUF1566 Neighborhood of RT #3 [3292791, 3296161] DUF1566 Avd_like RVT-DGRs Neighborhood of RT #4 [3822487, 3826293] InsE PHA02517 IS5 RVT-GII GIIM IS5 Neighborhood of RT #5 [4606481, 4610866] PAS_3 Tar IS5 RVT-GII GIIM IS5 Neighborhood of RT #6 [4902793, 4911144] INT_Lambda_C RVT-UG3 RVT-UG8 PRK15092 AzoR Feature: gene Location: 2061179-2061682 bp Feature: domain Description: DUF772 Location: 2061320-2061515 bp Feature: domain Description: DUF772 Location: 2061 320-2061 51 5 bp Feature: gene Location: 2061715-2061813 bp Feature: gene Location: 2062213-2063457 bp Ori: ATR85620.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2062417-2063074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206241 7-2063074 bp Feature: domain Description: GIIM Note: maturase Location: 2063152-2063374 bp Feature: domain Description: GIIM Note: maturase Location: 20631 52-2063374 bp Feature: gene Location: 2063531-2064001 bp Feature: domain Description: IS5 Location: 2063537-2063966 bp Feature: domain Description: IS5 Location: 2063537-2063966 bp Feature: gene Location: 2064341-2065288 bp Ori: ATR82818.1 Feature: domain Description: Inovirus_Gp2 Location: 2064785-2065271 bp Feature: domain Description: Inovirus_Gp2 Location: 2064785-2065271 bp Feature: gene Location: 2320234-2320728 bp Feature: gene Location: 2320813-2321736 bp Ori: ATR83024.1 Feature: domain Description: Dcm Location: 2320819-2321422 bp Feature: domain Description: Dcm Location: 232081 9-2321 422 bp Feature: domain Description: Dcm Location: 2321575-2321728 bp Feature: domain Description: Dcm Location: 2321 575-2321 728 bp Feature: gene Location: 2321733-2322890 bp Ori: ATR83025.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2321979-2322663 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2321 979-2322663 bp Feature: gene Location: 2323092-2323448 bp Ori: ATR83026.1 Feature: domain Description: Avd_like Location: 2323119-2323428 bp Feature: domain Description: Avd_like Location: 23231 1 9-2323428 bp Feature: gene Location: 2323503-2324117 bp Ori: ATR83027.1 Feature: domain Description: DUF1566 Location: 2323737-2324100 bp Feature: domain Description: DUF1 566 Location: 2323737-23241 00 bp Feature: gene Location: 3292791-3293405 bp Ori: ATR83809.1 Feature: domain Description: DUF1566 Location: 3293022-3293388 bp Feature: domain Description: DUF1 566 Location: 3293022-3293388 bp Feature: gene Location: 3293460-3293816 bp Ori: ATR83810.1 Feature: domain Description: Avd_like Location: 3293487-3293796 bp Feature: domain Description: Avd_like Location: 3293487-3293796 bp Feature: gene Location: 3294018-3295172 bp Ori: ATR83811.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3294264-3294948 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3294264-3294948 bp Feature: gene Location: 3295235-3295831 bp Feature: gene Location: 3295847-3296161 bp Feature: gene Location: 3822487-3823648 bp Feature: domain Description: InsE Location: 3822490-3822751 bp Feature: domain Description: InsE Location: 3822490-3822751 bp Feature: domain Description: PHA02517 Location: 3823087-3823405 bp Feature: domain Description: PHA0251 7 Location: 3823087-3823405 bp Feature: gene Location: 3823798-3824256 bp Feature: domain Description: IS5 Location: 3823804-3824230 bp Feature: domain Description: IS5 Location: 3823804-3824230 bp Feature: gene Location: 3824330-3825574 bp Ori: ATR85722.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3824534-3825191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3824534-38251 91 bp Feature: domain Description: GIIM Note: maturase Location: 3825269-3825491 bp Feature: domain Description: GIIM Note: maturase Location: 3825269-3825491 bp Feature: gene Location: 3825974-3826072 bp Feature: gene Location: 3826105-3826293 bp Feature: domain Description: IS5 Location: 3826108-3826294 bp Feature: domain Description: IS5 Location: 38261 08-3826294 bp Feature: gene Location: 4606481-4608046 bp Ori: ATR84929.1 Feature: domain Description: PAS_3 Location: 4606574-4606823 bp Feature: domain Description: PAS_3 Location: 4606574-4606823 bp Feature: domain Description: Tar Location: 4607003-4608041 bp Feature: domain Description: Tar Location: 4607003-4608041 bp Feature: gene Location: 4608281-4608751 bp Feature: domain Description: IS5 Location: 4608287-4608719 bp Feature: domain Description: IS5 Location: 4608287-460871 9 bp Feature: gene Location: 4608825-4610069 bp Ori: ATR85757.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609029-4609686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609029-4609686 bp Feature: domain Description: GIIM Note: maturase Location: 4609764-4609986 bp Feature: domain Description: GIIM Note: maturase Location: 4609764-4609986 bp Feature: gene Location: 4610469-4610567 bp Feature: gene Location: 4610600-4610866 bp Feature: domain Description: IS5 Location: 4610615-4610867 bp Feature: domain Description: IS5 Location: 461 061 5-461 0867 bp Feature: gene Location: 4902793-4903005 bp Feature: gene Location: 4903002-4904174 bp Ori: ATR85206.1 Feature: domain Description: INT_Lambda_C Location: 4903647-4904115 bp Feature: domain Description: INT_Lambda_C Location: 4903647-49041 1 5 bp Feature: gene Location: 4905533-4906327 bp Ori: ATR85207.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4905824-4906244 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4905824-4906244 bp Feature: gene Location: 4906828-4908744 bp Ori: ATR85208.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4907326-4907770 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4907326-4907770 bp Feature: gene Location: 4909514-4910368 bp Ori: ATR85209.1 Feature: domain Description: PRK15092 Location: 4909532-4910333 bp Feature: domain Description: PRK1 5092 Location: 4909532-491 0333 bp Feature: gene Location: 4910467-4911144 bp Ori: ATR85210.1 Feature: domain Description: AzoR Location: 4910470-4911088 bp Feature: domain Description: AzoR Location: 491 0470-491 1 088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), IS5 (COG3039), Inovirus_Gp2 (pfam11726), Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), InsE (COG2963)
PHA02517 (putative transposase OrfB; Reviewed), PAS_3 (pfam08447), Tar (COG0840), INT_Lambda_C (cd00800), RVT-UG3, RVT-UG8, PRK15092 (DNA-binding transcriptional repressor LrhA; Provisional), AzoR (COG1182)