myRT

myRT report for GCA_002754015.1_ASM275401v1

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Seq: CP024591.1 Porphyromonas gingivalis strain KCOM 2802 chromosome, complete genome (2374087 bp)
Overview 1 RT 1: 457651-460649 bp 2 RT 2: 1104194-1109732 bp 3 RT 3: 1479457-1485509 bp 4 RT 4: 2052850-2055930 bp Neighborhood of RT #1 [457651, 460705] DUF4134 RVT_N RVT-GII GIIM DUF4133 Neighborhood of RT #2 [1104194, 1109770] Wzy_C Wzy_C MATE_Wzx_like RVT_N RVT-GII GIIM CysE Neighborhood of RT #3 [1479457, 1485760] DUF1661 Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cmr6_III-B cas_Cmr5 Neighborhood of RT #4 [2052850, 2055944] DUF4133 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 457651-457872 bp Ori: ATR89996.1 Feature: domain Description: DUF4134 Location: 457675-457858 bp Feature: domain Description: DUF41 34 Location: 457675-457858 bp Feature: gene Location: 457893-458191 bp Feature: gene Location: 458481-460148 bp Ori: ATR89997.1 Gene: ltrA Feature: domain Description: RVT_N Location: 458538-458781 bp Feature: domain Description: RVT_N Location: 458538-458781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458826-459474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458826-459474 bp Feature: domain Description: GIIM Note: maturase Location: 459531-459762 bp Feature: domain Description: GIIM Note: maturase Location: 459531 -459762 bp Feature: gene Location: 460099-460366 bp Feature: gene Location: 460370-460705 bp Ori: ATR89998.1 Feature: domain Description: DUF4133 Location: 460382-460649 bp Feature: domain Description: DUF41 33 Location: 460382-460649 bp Feature: gene Location: 1104194-1105288 bp Ori: ATR90493.1 Feature: domain Description: Wzy_C Location: 1104395-1104557 bp Feature: domain Description: Wzy_C Location: 1 1 04395-1 1 04557 bp Feature: domain Description: Wzy_C Location: 1104710-1105106 bp Feature: domain Description: Wzy_C Location: 1 1 0471 0-1 1 051 06 bp Feature: gene Location: 1105288-1106742 bp Ori: ATR90494.1 Feature: domain Description: MATE_Wzx_like Location: 1105297-1106356 bp Feature: domain Description: MATE_Wzx_like Location: 1 1 05297-1 1 06356 bp Feature: gene Location: 1106929-1108596 bp Ori: ATR90495.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1106986-1107229 bp Feature: domain Description: RVT_N Location: 1 1 06986-1 1 07229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1107274-1107922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 07274-1 1 07922 bp Feature: domain Description: GIIM Note: maturase Location: 1107979-1108210 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 07979-1 1 0821 0 bp Feature: gene Location: 1108886-1109184 bp Feature: gene Location: 1109201-1109770 bp Ori: ATR90496.1 Feature: domain Description: CysE Location: 1109270-1109732 bp Feature: domain Description: CysE Location: 1 1 09270-1 1 09732 bp Feature: gene Location: 1479457-1479624 bp Ori: ATR90762.1 Feature: domain Description: DUF1661 Location: 1479460-1479550 bp Feature: domain Description: DUF1 661 Location: 1 479460-1 479550 bp Feature: gene Location: 1481062-1481352 bp Ori: ATR90763.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 1481083-1481302 bp Feature: domain Description: Cas2_I_II_III Location: 1 481 083-1 481 302 bp Feature: gene Location: 1481372-1484467 bp Ori: ATR90764.1 Gene: cas1 Feature: domain Description: CRISPR_Cas6 Location: 1481906-1482260 bp Feature: domain Description: CRISPR_Cas6 Location: 1 481 906-1 482260 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1482410-1483022 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 48241 0-1 483022 bp Feature: domain Description: Cas1_I-II-III Location: 1483472-1484426 bp Feature: domain Description: Cas1 _I-II-III Location: 1 483472-1 484426 bp Feature: gene Location: 1484529-1485323 bp Ori: ATR90765.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 1484604-1485312 bp Feature: domain Description: Cmr6_III-B Location: 1 484604-1 48531 2 bp Feature: gene Location: 1485320-1485760 bp Ori: ATR90766.1 Feature: domain Description: cas_Cmr5 Location: 1485359-1485509 bp Feature: domain Description: cas_Cmr5 Location: 1 485359-1 485509 bp Feature: gene Location: 2052850-2053227 bp Ori: ATR91224.1 Feature: domain Description: DUF4133 Location: 2052868-2053138 bp Feature: domain Description: DUF41 33 Location: 2052868-20531 38 bp Feature: gene Location: 2053232-2053499 bp Feature: gene Location: 2053450-2055117 bp Ori: ATR91225.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2053507-2053750 bp Feature: domain Description: RVT_N Location: 2053507-2053750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053795-2054443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053795-2054443 bp Feature: domain Description: GIIM Note: maturase Location: 2054500-2054731 bp Feature: domain Description: GIIM Note: maturase Location: 2054500-2054731 bp Feature: gene Location: 2055407-2055705 bp Feature: gene Location: 2055726-2055944 bp Ori: ATR91226.1 Feature: domain Description: DUF4134 Location: 2055750-2055930 bp Feature: domain Description: DUF41 34 Location: 2055750-2055930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Wzy_C (pfam04932), MATE_Wzx_like (cd13128), CysE (COG1045), DUF1661 (pfam07877), Cas2_I_II_III (cl11442)
CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), cas_Cmr5 (TIGR01881)