myRT

myRT report for GCA_002777255.1_ASM277725v1

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Seq: CP017634.1 Peptococcaceae bacterium DCMF, complete genome (6441270 bp)
Overview 1 RT 1: 1669942-1675237 bp 2 RT 2: 2423735-2429494 bp 3 RT 3: 2840252-2847024 bp 4 RT 4: 3139387-3147701 bp 5 RT 5: 3160820-3168462 bp 6 RT 6: 3440179-3447462 bp 7 RT 7: 4446471-4451347 bp 8 RT 8: 4468818-4474796 bp 9 RT 9: 5109302-5114578 bp 10 RT 10: 6029954-6035183 bp Neighborhood of RT #1 [1669942, 1675377] HicA_toxin DEDD_Tnp_IS110 Transposase_20 RVT-GII Intron_maturas2 HicB Phage_terminase Neighborhood of RT #2 [2423735, 2429535] RhsA Rhs_assc_core COG3547 RVT-GII HNHc DDE_Tnp_IS66_C Neighborhood of RT #3 [2840252, 2847059] OmpR RVT-GII GIIM RVT-GII RVT-GII modD_like HMA Neighborhood of RT #4 [3139387, 3147865] HTH_LUXR RVT_N RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII PHA02517 RpoE Neighborhood of RT #5 [3160820, 3168476] RpoE PHA02517 RVT-GII HNHc smpB RNase_R Neighborhood of RT #6 [3440179, 3447506] OmpR UPF0182 RVT-GII GIIM xerC INT_RitB_C_like Neighborhood of RT #7 [4446471, 4451496] NMT1 TauB RVT-GII GIIM metallo-hydrolase-like_MBL-fold Neighborhood of RT #8 [4468818, 4474804] MttB2 RVT-GII GIIM TIGR04076 iditol_2_DH_like Neighborhood of RT #9 [5109302, 5114610] Crp COG1149 RVT-GII GIIM TatC MngR Neighborhood of RT #10 [6029954, 6035419] Acetyltransf_10 Uup Uup RVT-GII GIIM Flavodoxin_2 WrbA Feature: gene Location: 1669942-1670082 bp Ori: ATW24715.1 Feature: domain Description: HicA_toxin Location: 1669954-1670071 bp Feature: domain Description: HicA_toxin Location: 1 669954-1 670071 bp Feature: gene Location: 1670274-1671311 bp Ori: ATW28452.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 1670289-1670505 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 670289-1 670505 bp Feature: domain Description: Transposase_20 Location: 1670814-1671060 bp Feature: domain Description: Transposase_20 Location: 1 67081 4-1 671 060 bp Feature: gene Location: 1671433-1673226 bp Ori: ATW24716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1671697-1672522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 671 697-1 672522 bp Feature: domain Description: Intron_maturas2 Location: 1672609-1672903 bp Feature: domain Description: Intron_maturas2 Location: 1 672609-1 672903 bp Feature: gene Location: 1674258-1674680 bp Ori: ATW24717.1 Feature: domain Description: HicB Location: 1674267-1674450 bp Feature: domain Description: HicB Location: 1 674267-1 674450 bp Feature: gene Location: 1675075-1675377 bp Ori: ATW24718.1 Feature: domain Description: Phage_terminase Location: 1675093-1675237 bp Feature: domain Description: Phage_terminase Location: 1 675093-1 675237 bp Feature: gene Location: 2423735-2424511 bp Ori: ATW25278.1 Feature: domain Description: RhsA Location: 2423786-2423924 bp Feature: domain Description: RhsA Location: 2423786-2423924 bp Feature: domain Description: Rhs_assc_core Location: 2424113-2424353 bp Feature: domain Description: Rhs_assc_core Location: 24241 1 3-2424353 bp Feature: gene Location: 2424598-2425719 bp Ori: ATW25279.1 Feature: domain Description: COG3547 Location: 2424619-2425531 bp Feature: domain Description: COG3547 Location: 242461 9-2425531 bp Feature: gene Location: 2426823-2428688 bp Ori: ATW25280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427144-2427852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24271 44-2427852 bp Feature: domain Description: HNHc Note: nucleases Location: 2428455-2428614 bp Feature: domain Description: HNHc Note: nucleases Location: 2428455-242861 4 bp Feature: gene Location: 2428996-2429205 bp Feature: gene Location: 2429326-2429535 bp Ori: ATW25282.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 2429371-2429494 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2429371 -2429494 bp Feature: gene Location: 2840252-2840935 bp Ori: ATW28595.1 Feature: domain Description: OmpR Location: 2840276-2840924 bp Feature: domain Description: OmpR Location: 2840276-2840924 bp Feature: gene Location: 2841136-2841723 bp Feature: gene Location: 2842132-2842944 bp Ori: ATW25582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2842135-2842498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28421 35-2842498 bp Feature: domain Description: GIIM Note: maturase Location: 2842555-2842774 bp Feature: domain Description: GIIM Note: maturase Location: 2842555-2842774 bp Feature: gene Location: 2843077-2844366 bp Ori: ATW25583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2843332-2844016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2843332-284401 6 bp Feature: gene Location: 2844888-2845449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845245-2845449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845245-2845449 bp Feature: gene Location: 2845967-2846812 bp Ori: ATW28596.1 Feature: domain Description: modD_like Location: 2845985-2846798 bp Feature: domain Description: modD_like Location: 2845985-2846798 bp Feature: gene Location: 2846832-2847059 bp Ori: ATW25584.1 Feature: domain Description: HMA Location: 2846850-2847024 bp Feature: domain Description: HMA Location: 2846850-2847024 bp Feature: gene Location: 3139387-3140061 bp Feature: gene Location: 3140049-3140456 bp Ori: ATW25805.1 Feature: domain Description: HTH_LUXR Location: 3140271-3140436 bp Feature: domain Description: HTH_LUXR Location: 31 40271 -31 40436 bp Feature: gene Location: 3140965-3141660 bp Ori: ATW25806.1 Feature: domain Description: RVT_N Location: 3140992-3141223 bp Feature: domain Description: RVT_N Location: 31 40992-31 41 223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3141271-3141655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 41 271 -31 41 655 bp Feature: gene Location: 3141776-3142786 bp Ori: ATW25807.1 Feature: domain Description: Phage_int_SAM_1 Location: 3141821-3142073 bp Feature: domain Description: Phage_int_SAM_1 Location: 31 41 821 -31 42073 bp Feature: domain Description: INT_RitC_C_like Location: 3142154-3142706 bp Feature: domain Description: INT_RitC_C_like Location: 31 421 54-31 42706 bp Feature: gene Location: 3142773-3143753 bp Ori: ATW25808.1 Feature: domain Description: INT_RitB_C_like Location: 3143109-3143685 bp Feature: domain Description: INT_RitB_C_like Location: 31 431 09-31 43685 bp Feature: gene Location: 3143746-3144981 bp Ori: ATW25809.1 Feature: domain Description: Phage_int_SAM_4 Location: 3144100-3144334 bp Feature: domain Description: Phage_int_SAM_4 Location: 31 441 00-31 44334 bp Feature: domain Description: INT_RitA_C_like Location: 3144415-3144946 bp Feature: domain Description: INT_RitA_C_like Location: 31 4441 5-31 44946 bp Feature: gene Location: 3145136-3145846 bp Ori: ATW25810.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3145457-3145841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 45457-31 45841 bp Feature: gene Location: 3146682-3147503 bp Ori: ATW28621.1 Feature: domain Description: PHA02517 Location: 3146703-3147468 bp Feature: domain Description: PHA0251 7 Location: 31 46703-31 47468 bp Feature: gene Location: 3147563-3147865 bp Ori: ATW25811.1 Feature: domain Description: RpoE Location: 3147578-3147701 bp Feature: domain Description: RpoE Location: 31 47578-31 47701 bp Feature: gene Location: 3160820-3161122 bp Ori: ATW25820.1 Feature: domain Description: RpoE Location: 3160835-3160958 bp Feature: domain Description: RpoE Location: 31 60835-31 60958 bp Feature: gene Location: 3161182-3162003 bp Ori: ATW28623.1 Feature: domain Description: PHA02517 Location: 3161203-3161968 bp Feature: domain Description: PHA0251 7 Location: 31 61 203-31 61 968 bp Feature: gene Location: 3162839-3164704 bp Ori: ATW25821.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163160-3163868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 631 60-31 63868 bp Feature: domain Description: HNHc Note: nucleases Location: 3164471-3164630 bp Feature: domain Description: HNHc Note: nucleases Location: 31 64471 -31 64630 bp Feature: gene Location: 3165736-3166206 bp Ori: ATW25822.1 Feature: domain Description: smpB Location: 3165757-3166192 bp Feature: domain Description: smpB Location: 31 65757-31 661 92 bp Feature: gene Location: 3166362-3168476 bp Ori: ATW25823.1 Feature: domain Description: RNase_R Location: 3166374-3168462 bp Feature: domain Description: RNase_R Location: 31 66374-31 68462 bp Feature: gene Location: 3440179-3440565 bp Ori: ATW26033.1 Feature: domain Description: OmpR Location: 3440188-3440542 bp Feature: domain Description: OmpR Location: 34401 88-3440542 bp Feature: gene Location: 3440816-3443557 bp Ori: ATW26034.1 Feature: domain Description: UPF0182 Location: 3440843-3443201 bp Feature: domain Description: UPF01 82 Location: 3440843-3443201 bp Feature: gene Location: 3443704-3445122 bp Ori: ATW26035.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444061-3444676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444061 -3444676 bp Feature: domain Description: GIIM Note: maturase Location: 3444733-3444952 bp Feature: domain Description: GIIM Note: maturase Location: 3444733-3444952 bp Feature: gene Location: 3445537-3446547 bp Ori: ATW26036.1 Feature: domain Description: xerC Location: 3445576-3446464 bp Feature: domain Description: xerC Location: 3445576-3446464 bp Feature: gene Location: 3446544-3447506 bp Ori: ATW26037.1 Feature: domain Description: INT_RitB_C_like Location: 3446871-3447462 bp Feature: domain Description: INT_RitB_C_like Location: 3446871 -3447462 bp Feature: gene Location: 4446471-4447481 bp Ori: ATW28761.1 Feature: domain Description: NMT1 Location: 4446618-4447257 bp Feature: domain Description: NMT1 Location: 444661 8-4447257 bp Feature: gene Location: 4447493-4448230 bp Ori: ATW26771.1 Feature: domain Description: TauB Location: 4447508-4448225 bp Feature: domain Description: TauB Location: 4447508-4448225 bp Feature: gene Location: 4448771-4450105 bp Ori: ATW26772.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4449026-4449725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4449026-4449725 bp Feature: domain Description: GIIM Note: maturase Location: 4449809-4450013 bp Feature: domain Description: GIIM Note: maturase Location: 4449809-445001 3 bp Feature: gene Location: 4450275-4450574 bp Feature: gene Location: 4450753-4451496 bp Ori: ATW26774.1 Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 4450801-4451347 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 4450801 -4451 347 bp Feature: gene Location: 4468818-4470275 bp Ori: ATW26786.1 Feature: domain Description: MttB2 Location: 4468830-4470237 bp Feature: domain Description: MttB2 Location: 4468830-4470237 bp Feature: gene Location: 4470430-4470987 bp Feature: gene Location: 4471561-4472895 bp Ori: ATW26788.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471816-4472515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471 81 6-447251 5 bp Feature: domain Description: GIIM Note: maturase Location: 4472599-4472803 bp Feature: domain Description: GIIM Note: maturase Location: 4472599-4472803 bp Feature: gene Location: 4473061-4473372 bp Ori: ATW26789.1 Feature: domain Description: TIGR04076 Location: 4473064-4473367 bp Feature: domain Description: TIGR04076 Location: 4473064-4473367 bp Feature: gene Location: 4473821-4474804 bp Ori: ATW28764.1 Feature: domain Description: iditol_2_DH_like Location: 4473827-4474796 bp Feature: domain Description: iditol_2_DH_like Location: 4473827-4474796 bp Feature: gene Location: 5109302-5109976 bp Ori: ATW27278.1 Feature: domain Description: Crp Location: 5109398-5109953 bp Feature: domain Description: Crp Location: 51 09398-51 09953 bp Feature: gene Location: 5110084-5110821 bp Ori: ATW27279.1 Feature: domain Description: COG1149 Location: 5110093-5110306 bp Feature: domain Description: COG1 1 49 Location: 51 1 0093-51 1 0306 bp Feature: gene Location: 5111295-5112713 bp Ori: ATW27280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5111652-5112267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 1 652-51 1 2267 bp Feature: domain Description: GIIM Note: maturase Location: 5112324-5112543 bp Feature: domain Description: GIIM Note: maturase Location: 51 1 2324-51 1 2543 bp Feature: gene Location: 5112848-5113594 bp Ori: ATW27281.1 Feature: domain Description: TatC Location: 5112860-5113571 bp Feature: domain Description: TatC Location: 51 1 2860-51 1 3571 bp Feature: gene Location: 5113852-5114610 bp Ori: ATW27282.1 Feature: domain Description: MngR Location: 5113882-5114578 bp Feature: domain Description: MngR Location: 51 1 3882-51 1 4578 bp Feature: gene Location: 6029954-6030352 bp Ori: ATW28945.1 Feature: domain Description: Acetyltransf_10 Location: 6030044-6030320 bp Feature: domain Description: Acetyltransf_1 0 Location: 6030044-6030320 bp Feature: gene Location: 6030638-6032119 bp Ori: ATW27935.1 Feature: domain Description: Uup Location: 6030641-6030884 bp Feature: domain Description: Uup Location: 6030641 -6030884 bp Feature: domain Description: Uup Location: 6030935-6032114 bp Feature: domain Description: Uup Location: 6030935-60321 1 4 bp Feature: gene Location: 6032646-6034064 bp Ori: ATW27936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6033003-6033618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6033003-603361 8 bp Feature: domain Description: GIIM Note: maturase Location: 6033675-6033894 bp Feature: domain Description: GIIM Note: maturase Location: 6033675-6033894 bp Feature: gene Location: 6034182-6034862 bp Ori: ATW27937.1 Feature: domain Description: Flavodoxin_2 Location: 6034188-6034530 bp Feature: domain Description: Flavodoxin_2 Location: 60341 88-6034530 bp Feature: gene Location: 6034859-6035419 bp Ori: ATW27938.1 Feature: domain Description: WrbA Location: 6034862-6035183 bp Feature: domain Description: WrbA Location: 6034862-60351 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicA_toxin (pfam07927), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, Intron_maturas2 (pfam01348), HicB (pfam05534), Phage_terminase (pfam10668), RhsA (COG3209), Rhs_assc_core (TIGR03696), COG3547 (Transposase )
HNHc (smart00507), DDE_Tnp_IS66_C (pfam13817), OmpR (COG0745), GIIM (pfam08388), modD_like (cd01573), HMA (pfam00403), HTH_LUXR (smart00421), RVT_N (pfam13655), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)
INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), PHA02517 (putative transposase OrfB; Reviewed), RpoE (COG3343), smpB (TIGR00086), RNase_R (TIGR02063), UPF0182 (pfam03699), xerC (PRK01287), NMT1 (pfam09084)
TauB (COG4525), metallo-hydrolase-like_MBL-fold (cl23716), MttB2 (COG5598), TIGR04076 (TIGR04076 family protein), iditol_2_DH_like (cd08235), Crp (pfam00325), COG1149 (MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain ), TatC (pfam00902), MngR (COG2188), Acetyltransf_10 (pfam13673)
Uup (COG0488), Flavodoxin_2 (pfam02525), WrbA (COG0655)