myRT

myRT report for GCA_002786655.1_ASM278665v1

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Seq: CP024830.1 Escherichia coli strain CREC-532 chromosome, complete genome (4837992 bp)
Overview 1 RT 1: 78968-83251 bp 2 RT 2: 376356-379721 bp 3 RT 3: 1541083-1544722 bp 4 RT 4: 1990614-1999588 bp 5 RT 5: 2958690-2963728 bp 6 RT 6: 3802778-3807145 bp Neighborhood of RT #1 [78968, 83259] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #2 [376356, 380118] DUF1016_N PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [1541083, 1544889] InsE RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #4 [1990614, 1999983] InsE RVT-GII PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #5 [2958690, 2964125] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [3802778, 3807150] PRK10002 PHA02517 RVT-GII GIIM InsG YkfC Feature: gene Location: 78968-79873 bp Feature: gene Location: 79847-80134 bp Feature: gene Location: 80359-80750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80689-80749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80689-80749 bp Feature: gene Location: 80926-81447 bp Ori: ATX17524.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80932-81214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80932-81 21 4 bp Feature: domain Description: GIIM Note: maturase Location: 81262-81442 bp Feature: domain Description: GIIM Note: maturase Location: 81 262-81 442 bp Feature: gene Location: 81769-81957 bp Feature: gene Location: 82030-83259 bp Ori: ATX17526.1 Feature: domain Description: YesM Location: 82510-83251 bp Feature: domain Description: YesM Location: 8251 0-83251 bp Feature: gene Location: 376356-376592 bp Feature: domain Description: DUF1016_N Location: 376413-376590 bp Feature: domain Description: DUF1 01 6_N Location: 37641 3-376590 bp Feature: gene Location: 376635-377108 bp Feature: domain Description: PHA02517 Location: 376641-377106 bp Feature: domain Description: PHA0251 7 Location: 376641 -3771 06 bp Feature: gene Location: 377198-378721 bp Ori: ATX17806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377471-378203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377471 -378203 bp Feature: domain Description: GIIM Note: maturase Location: 378278-378476 bp Feature: domain Description: GIIM Note: maturase Location: 378278-378476 bp Feature: gene Location: 379015-379386 bp Feature: gene Location: 379379-380118 bp Feature: domain Description: InsE Location: 379382-379721 bp Feature: domain Description: InsE Location: 379382-379721 bp Feature: gene Location: 1541083-1541800 bp Feature: domain Description: InsE Location: 1541122-1541371 bp Feature: domain Description: InsE Location: 1 541 1 22-1 541 371 bp Feature: gene Location: 1541727-1542164 bp Feature: gene Location: 1542458-1543981 bp Ori: ATX18855.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542731-1543463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 542731 -1 543463 bp Feature: domain Description: GIIM Note: maturase Location: 1543538-1543736 bp Feature: domain Description: GIIM Note: maturase Location: 1 543538-1 543736 bp Feature: gene Location: 1544062-1544549 bp Feature: domain Description: PHA02517 Location: 1544065-1544236 bp Feature: domain Description: PHA0251 7 Location: 1 544065-1 544236 bp Feature: gene Location: 1544476-1544889 bp Ori: ATX18856.1 Feature: domain Description: COG2085 Location: 1544575-1544722 bp Feature: domain Description: COG2085 Location: 1 544575-1 544722 bp Feature: gene Location: 1990614-1991353 bp Feature: domain Description: InsE Location: 1990617-1990962 bp Feature: domain Description: InsE Location: 1 99061 7-1 990962 bp Feature: gene Location: 1991346-1991717 bp Feature: gene Location: 1992011-1993488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1992284-1992359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 992284-1 992359 bp Feature: gene Location: 1993569-1994027 bp Feature: domain Description: PHA02517 Location: 1993572-1994019 bp Feature: domain Description: PHA0251 7 Location: 1 993572-1 99401 9 bp Feature: gene Location: 1994248-1999983 bp Ori: ATX19258.1 Feature: domain Description: DUF4011 Location: 1994338-1995172 bp Feature: domain Description: DUF401 1 Location: 1 994338-1 9951 72 bp Feature: domain Description: DEXXQc_SF1 Location: 1995529-1998631 bp Feature: domain Description: DEXXQc_SF1 Location: 1 995529-1 998631 bp Feature: domain Description: SF1_C_Upf1 Location: 1998640-1999168 bp Feature: domain Description: SF1 _C_Upf1 Location: 1 998640-1 9991 68 bp Feature: domain Description: MTES_1575 Location: 1999297-1999588 bp Feature: domain Description: MTES_1 575 Location: 1 999297-1 999588 bp Feature: gene Location: 2958690-2960600 bp Feature: gene Location: 2960642-2961115 bp Feature: domain Description: PHA02517 Location: 2960648-2961113 bp Feature: domain Description: PHA0251 7 Location: 2960648-2961 1 1 3 bp Feature: gene Location: 2961205-2962728 bp Ori: ATX20143.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2961478-2962210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2961 478-296221 0 bp Feature: domain Description: GIIM Note: maturase Location: 2962285-2962483 bp Feature: domain Description: GIIM Note: maturase Location: 2962285-2962483 bp Feature: gene Location: 2963022-2963393 bp Feature: gene Location: 2963386-2964125 bp Feature: domain Description: InsE Location: 2963389-2963728 bp Feature: domain Description: InsE Location: 2963389-2963728 bp Feature: gene Location: 3802778-3803698 bp Feature: domain Description: PRK10002 Location: 3802781-3803699 bp Feature: domain Description: PRK1 0002 Location: 3802781 -3803699 bp Feature: gene Location: 3803708-3804196 bp Feature: domain Description: PHA02517 Location: 3803711-3804185 bp Feature: domain Description: PHA0251 7 Location: 380371 1 -38041 85 bp Feature: gene Location: 3804277-3805659 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804409-3805141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804409-38051 41 bp Feature: domain Description: GIIM Note: maturase Location: 3805216-3805414 bp Feature: domain Description: GIIM Note: maturase Location: 380521 6-380541 4 bp Feature: gene Location: 3805716-3806828 bp Ori: ATX20949.1 Feature: domain Description: InsG Location: 3805719-3806757 bp Feature: domain Description: InsG Location: 380571 9-3806757 bp Feature: gene Location: 3806995-3807150 bp Ori: ATX20950.1 Feature: domain Description: YkfC Location: 3807004-3807145 bp Feature: domain Description: YkfC Location: 3807004-38071 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972), DUF1016_N (pfam17761), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2085 (Predicted dinucleotide-binding enzyme ), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808)
MTES_1575 (pfam18741), PRK10002 (porin OmpF), InsG (COG3385), YkfC (COG3344)