myRT

myRT report for GCA_002786755.1_ASM278675v1

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Seq: CP024838.1 Klebsiella pneumoniae strain CRKP-1215 chromosome, complete genome (5420542 bp)
Overview 1 RT 1: 2154688-2160698 bp 2 RT 2: 2844122-2847182 bp 3 RT 3: 4780758-4785391 bp 4 RT 4: 5300403-5305286 bp Neighborhood of RT #1 [2154688, 2160700] PRK11115 RVT-GII GIIM Sugarporin_N LamB Fes Neighborhood of RT #2 [2844122, 2847182] DinI HTH_XRE RVT-Retrons Neighborhood of RT #3 [4780758, 4785393] N6_acetyl_AAC6 RVT-GII GIIM Arr-ms PRK15417 Neighborhood of RT #4 [5300403, 5305288] PRK15110 PRK09951 RVT-UG11 umuC Feature: gene Location: 2154688-2155413 bp Ori: ATX29766.1 Gene: phoU Feature: domain Description: PRK11115 Location: 2154691-2155393 bp Feature: domain Description: PRK1 1 1 1 5 Location: 21 54691 -21 55393 bp Feature: gene Location: 2155582-2155761 bp Feature: gene Location: 2156412-2157665 bp Ori: ATX29767.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2156604-2157228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 56604-21 57228 bp Feature: domain Description: GIIM Note: maturase Location: 2157267-2157486 bp Feature: domain Description: GIIM Note: maturase Location: 21 57267-21 57486 bp Feature: gene Location: 2157861-2159495 bp Ori: ATX29768.1 Feature: domain Description: Sugarporin_N Location: 2157867-2158032 bp Feature: domain Description: Sugarporin_N Location: 21 57867-21 58032 bp Feature: domain Description: LamB Location: 2158182-2159493 bp Feature: domain Description: LamB Location: 21 581 82-21 59493 bp Feature: gene Location: 2159534-2160700 bp Ori: ATX29769.1 Feature: domain Description: Fes Location: 2159786-2160698 bp Feature: domain Description: Fes Location: 21 59786-21 60698 bp Feature: gene Location: 2844122-2844562 bp Ori: ATX30414.1 Feature: domain Description: DinI Location: 2844377-2844560 bp Feature: domain Description: DinI Location: 2844377-2844560 bp Feature: gene Location: 2845183-2845491 bp Ori: ATX30415.1 Feature: domain Description: HTH_XRE Location: 2845195-2845360 bp Feature: domain Description: HTH_XRE Location: 28451 95-2845360 bp Feature: gene Location: 2845469-2846419 bp Ori: ATX30416.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2845649-2846192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2845649-28461 92 bp Feature: gene Location: 2846558-2846989 bp Feature: gene Location: 2846988-2847182 bp Feature: gene Location: 4780758-4780916 bp Feature: gene Location: 4781146-4781700 bp Ori: ATX32193.1 Gene: aacA4 Feature: domain Description: N6_acetyl_AAC6 Location: 4781152-4781698 bp Feature: domain Description: N6_acetyl_AAC6 Location: 4781 1 52-4781 698 bp Feature: gene Location: 4782421-4783674 bp Ori: ATX32194.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4782613-4783237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478261 3-4783237 bp Feature: domain Description: GIIM Note: maturase Location: 4783276-4783495 bp Feature: domain Description: GIIM Note: maturase Location: 4783276-4783495 bp Feature: gene Location: 4783755-4784207 bp Ori: ATX32195.1 Feature: domain Description: Arr-ms Location: 4783815-4784121 bp Feature: domain Description: Arr-ms Location: 478381 5-47841 21 bp Feature: gene Location: 4784380-4785393 bp Ori: ATX32196.1 Feature: domain Description: PRK15417 Location: 4784383-4785391 bp Feature: domain Description: PRK1 541 7 Location: 4784383-4785391 bp Feature: gene Location: 5300403-5301368 bp Ori: ATX32682.1 Feature: domain Description: PRK15110 Location: 5300406-5301366 bp Feature: domain Description: PRK1 51 1 0 Location: 5300406-5301 366 bp Feature: gene Location: 5301573-5302241 bp Ori: ATX32683.1 Feature: domain Description: PRK09951 Location: 5301576-5302239 bp Feature: domain Description: PRK09951 Location: 5301 576-5302239 bp Feature: gene Location: 5302442-5303071 bp Ori: ATX33030.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 5302445-5302892 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 5302445-5302892 bp Feature: gene Location: 5303610-5303867 bp Feature: gene Location: 5304023-5305288 bp Ori: ATX32685.1 Feature: domain Description: umuC Location: 5304026-5305286 bp Feature: domain Description: umuC Location: 5304026-5305286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11115 (phosphate signaling complex protein PhoU), RVT-GII, GIIM (pfam08388), Sugarporin_N (pfam11471), LamB (smart00281), Fes (COG2382), DinI (pfam06183), HTH_XRE (smart00530), RVT-Retrons, N6_acetyl_AAC6 (TIGR04431)
Arr-ms (pfam12120), PRK15417 (integron integrase), PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609)

Seq: CP024840.1 Klebsiella pneumoniae strain CRKP-1215 plasmid pCRKP-1215_2, complete sequence (96185 bp)
Overview 1 RT 1: 45561-49167 bp 2 RT 2: 63709-68717 bp Neighborhood of RT #1 [45561, 49289] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [63709, 68719] DHFR_1 PRK13746 RVT-GII GIIM Multi_Drug_Res PRK13753 Feature: gene Location: 45561-45818 bp Feature: gene Location: 45786-45961 bp Feature: gene Location: 46698-48365 bp Ori: ATX33223.1 Gene: ltrA Feature: domain Description: RVT_N Location: 46746-46983 bp Feature: domain Description: RVT_N Location: 46746-46983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47034-47676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47034-47676 bp Feature: domain Description: GIIM Note: maturase Location: 47727-47961 bp Feature: domain Description: GIIM Note: maturase Location: 4772 7-47961 bp Feature: domain Description: HNHc Note: nucleases Location: 48171-48330 bp Feature: domain Description: HNHc Note: nucleases Location: 48171-48330 bp Feature: gene Location: 48679-48870 bp Feature: gene Location: 48867-49289 bp Ori: ATX33225.1 Feature: domain Description: DUF1380 Location: 48870-49167 bp Feature: domain Description: DUF1380 Location: 48870-49167 bp Feature: gene Location: 63709-64206 bp Ori: ATX33237.1 Feature: domain Description: DHFR_1 Location: 63733-64180 bp Feature: domain Description: DHFR_1 Location: 63733-64180 bp Feature: gene Location: 64614-65405 bp Ori: ATX33238.1 Feature: domain Description: PRK13746 Location: 64617-65397 bp Feature: domain Description: PRK13746 Location: 64617-65397 bp Feature: gene Location: 65481-66734 bp Ori: ATX33239.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65673-66297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65673-662 97 bp Feature: domain Description: GIIM Note: maturase Location: 66336-66555 bp Feature: domain Description: GIIM Note: maturase Location: 66336-66555 bp Feature: gene Location: 67539-67886 bp Ori: ATX33240.1 Feature: domain Description: Multi_Drug_Res Location: 67548-67821 bp Feature: domain Description: Multi_Drug_Res Location: 67548-6782 1 bp Feature: gene Location: 67880-68719 bp Ori: ATX33241.1 Feature: domain Description: PRK13753 Location: 67883-68717 bp Feature: domain Description: PRK13753 Location: 67883-68717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), DHFR_1 (pfam00186), PRK13746 (aminoglycoside resistance protein; Provisional), Multi_Drug_Res (pfam00893), PRK13753 (dihydropteroate synthase; Provisional)

Seq: CP024839.1 Klebsiella pneumoniae strain CRKP-1215 plasmid pCRKP-1215_1, complete sequence (130922 bp)
Overview 1 RT 1: 2606-6854 bp 2 RT 2: 20964-25597 bp Neighborhood of RT #1 [2606, 6880] MobC RVT-GII GIIM PRK13746 DHFR_1 Neighborhood of RT #2 [20964, 25599] N6_acetyl_AAC6 RVT-GII GIIM Arr-ms PRK15417 Feature: gene Location: 2606-2761 bp Feature: gene Location: 2720-2986 bp Ori: ATX33040.1 Feature: domain Description: MobC Location: 2771-2891 bp Feature: domain Description: MobC Location: 2771-2891 bp Feature: gene Location: 3855-5108 bp Ori: ATX33041.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4047-4671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4047-4671 bp Feature: domain Description: GIIM Note: maturase Location: 4710-4929 bp Feature: domain Description: GIIM Note: maturase Location: 4710-4929 bp Feature: gene Location: 5184-5975 bp Ori: ATX33042.1 Feature: domain Description: PRK13746 Location: 5187-5967 bp Feature: domain Description: PRK13 746 Location: 5187-5967 bp Feature: gene Location: 6383-6880 bp Ori: ATX33043.1 Feature: domain Description: DHFR_1 Location: 6407-6854 bp Feature: domain Description: DHFR_1 Location: 6407-6854 bp Feature: gene Location: 20964-21122 bp Feature: gene Location: 21352-21906 bp Ori: ATX33057.1 Gene: aacA4 Feature: domain Description: N6_acetyl_AAC6 Location: 21358-21904 bp Feature: domain Description: N6_acetyl_AAC6 Location: 213 58-21904 bp Feature: gene Location: 22627-23880 bp Ori: ATX33058.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22819-23443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22819-23 443 bp Feature: domain Description: GIIM Note: maturase Location: 23482-23701 bp Feature: domain Description: GIIM Note: maturase Location: 23 482-23 701 bp Feature: gene Location: 23961-24413 bp Ori: ATX33059.1 Feature: domain Description: Arr-ms Location: 24021-24327 bp Feature: domain Description: Arr-ms Location: 24021-243 27 bp Feature: gene Location: 24586-25599 bp Ori: ATX33060.1 Feature: domain Description: PRK15417 Location: 24589-25597 bp Feature: domain Description: PRK15417 Location: 24589-25597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), RVT-GII, GIIM (pfam08388), PRK13746 (aminoglycoside resistance protein; Provisional), DHFR_1 (pfam00186), N6_acetyl_AAC6 (TIGR04431), Arr-ms (pfam12120), PRK15417 (integron integrase)