myRT

myRT report for GCA_002787215.1_ASM278721v1

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Seq: CP024852.1 Escherichia coli strain AR_0006 plasmid tig00000164, complete sequence (167974 bp)
Overview 1 RT 1: 98145-101852 bp 2 RT 2: 117453-125767 bp Neighborhood of RT #1 [98145, 101854] RVT_N RVT-GII GIIM HNHc PRK09738 Neighborhood of RT #2 [117453, 125868] XerC PRK13732 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM HNHc SR-25 AdoMet_MTases Feature: gene Location: 98145-98432 bp Feature: gene Location: 98496-98732 bp Feature: gene Location: 99634-101301 bp Ori: ATX45171.1 Gene: ltrA Feature: domain Description: RVT_N Location: 99682-99919 bp Feature: domain Description: RVT_N Location: 99682-9991 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99970-100612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99970-1 0061 2 bp Feature: domain Description: GIIM Note: maturase Location: 100663-100897 bp Feature: domain Description: GIIM Note: maturase Location: 1 00663-1 00897 bp Feature: domain Description: HNHc Note: nucleases Location: 101107-101266 bp Feature: domain Description: HNHc Note: nucleases Location: 1 01 1 07-1 01 266 bp Feature: gene Location: 101279-101461 bp Feature: gene Location: 101696-101854 bp Ori: ATX45173.1 Feature: domain Description: PRK09738 Location: 101699-101852 bp Feature: domain Description: PRK09738 Location: 1 01 699-1 01 852 bp Feature: gene Location: 117453-118700 bp Ori: ATX45183.1 Feature: domain Description: XerC Location: 117828-118608 bp Feature: domain Description: XerC Location: 1 1 7828-1 1 8608 bp Feature: gene Location: 118859-119344 bp Ori: ATX45184.1 Feature: domain Description: PRK13732 Location: 118862-119342 bp Feature: domain Description: PRK1 3732 Location: 1 1 8862-1 1 9342 bp Feature: gene Location: 119494-121395 bp Ori: ATX45185.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119761-120592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9761 -1 20592 bp Feature: domain Description: Intron_maturas2 Location: 120706-120964 bp Feature: domain Description: Intron_maturas2 Location: 1 20706-1 20964 bp Feature: domain Description: HNHc Note: nucleases Location: 121138-121300 bp Feature: domain Description: HNHc Note: nucleases Location: 1 21 1 38-1 21 300 bp Feature: gene Location: 121958-122170 bp Feature: gene Location: 122112-122340 bp Feature: gene Location: 122275-122469 bp Feature: gene Location: 123251-124918 bp Ori: ATX45187.1 Gene: ltrA Feature: domain Description: RVT_N Location: 123299-123536 bp Feature: domain Description: RVT_N Location: 1 23299-1 23536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123587-124229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23587-1 24229 bp Feature: domain Description: GIIM Note: maturase Location: 124280-124514 bp Feature: domain Description: GIIM Note: maturase Location: 1 24280-1 2451 4 bp Feature: domain Description: HNHc Note: nucleases Location: 124724-124883 bp Feature: domain Description: HNHc Note: nucleases Location: 1 24724-1 24883 bp Feature: gene Location: 124896-125324 bp Feature: domain Description: SR-25 Location: 125025-125175 bp Feature: domain Description: SR-25 Location: 1 25025-1 251 75 bp Feature: gene Location: 125305-125868 bp Ori: ATX45188.1 Feature: domain Description: AdoMet_MTases Location: 125467-125767 bp Feature: domain Description: AdoMet_MTases Location: 1 25467-1 25767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional), XerC (COG4973), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), SR-25 (pfam10500), AdoMet_MTases (cl17173)

Seq: CP024851.1 Escherichia coli strain AR_0006, complete genome (5054076 bp)
Overview 1 RT 1: 2020511-2026754 bp 2 RT 2: 2728505-2733083 bp Neighborhood of RT #1 [2020511, 2026891] RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [2728505, 2733091] HTH_XRE RVT-Retrons FRG Q Feature: gene Location: 2020511-2020669 bp Feature: gene Location: 2020860-2021330 bp Feature: gene Location: 2021677-2024886 bp Ori: ATX42096.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2022205-2022694 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 02 2 2 05-2 02 2 694 bp Feature: domain Description: nitrilase Location: 2024200-2024797 bp Feature: domain Description: nitrilase Location: 2 02 42 00-2 02 4797 bp Feature: gene Location: 2025181-2025984 bp Ori: ATX42097.1 Feature: domain Description: AbiEi_3_N Location: 2025214-2025475 bp Feature: domain Description: AbiEi_3_N Location: 2 02 52 14-2 02 5475 bp Feature: domain Description: AbiEi_3 Location: 2025487-2025943 bp Feature: domain Description: AbiEi_3 Location: 2 02 5487-2 02 5943 bp Feature: gene Location: 2025971-2026891 bp Ori: ATX42098.1 Feature: domain Description: AbiEii Location: 2026013-2026754 bp Feature: domain Description: AbiEii Location: 2 02 6013-2 02 6754 bp Feature: gene Location: 2728505-2728798 bp Feature: gene Location: 2728835-2729155 bp Ori: ATX42710.1 Feature: domain Description: HTH_XRE Location: 2728850-2729009 bp Feature: domain Description: HTH_XRE Location: 2 72 8850-2 72 9009 bp Feature: gene Location: 2729121-2730071 bp Ori: ATX42711.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2729301-2729844 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 72 9301-2 72 9844 bp Feature: gene Location: 2730180-2731544 bp Ori: ATX42712.1 Feature: domain Description: FRG Location: 2730747-2731032 bp Feature: domain Description: FRG Location: 2 730747-2 731032 bp Feature: gene Location: 2732057-2733091 bp Ori: ATX42713.1 Feature: domain Description: Q Location: 2732060-2733083 bp Feature: domain Description: Q Location: 2 732 060-2 733083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901), Q (PHA02536)

Seq: CP024854.1 Escherichia coli strain AR_0006 plasmid tig00000311, complete sequence (96413 bp)
Overview 1 RT 1: 26764-33373 bp Neighborhood of RT #1 [26764, 33378] RVT_N RVT-GII GIIM HNHc RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 26764-26863 bp Feature: gene Location: 26901-27086 bp Feature: gene Location: 27064-28731 bp Ori: ATX45324.1 Gene: ltrA Feature: domain Description: RVT_N Location: 27112-27349 bp Feature: domain Description: RVT_N Location: 27112-273 49 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27400-28042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27400-28042 bp Feature: domain Description: GIIM Note: maturase Location: 28093-28327 bp Feature: domain Description: GIIM Note: maturase Location: 28093 -283 27 bp Feature: domain Description: HNHc Note: nucleases Location: 28537-28696 bp Feature: domain Description: HNHc Note: nucleases Location: 2853 7-28696 bp Feature: gene Location: 29305-29778 bp Feature: gene Location: 29696-29902 bp Feature: gene Location: 30551-32452 bp Ori: ATX45325.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30818-31649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0818-3 1649 bp Feature: domain Description: Intron_maturas2 Location: 31763-32021 bp Feature: domain Description: Intron_maturas2 Location: 3 1763 -3 2021 bp Feature: domain Description: HNHc Note: nucleases Location: 32195-32357 bp Feature: domain Description: HNHc Note: nucleases Location: 3 2195-3 23 57 bp Feature: gene Location: 32602-33087 bp Ori: ATX45326.1 Feature: domain Description: PRK13732 Location: 32605-33085 bp Feature: domain Description: PRK13 73 2 Location: 3 2605-3 3 085 bp Feature: gene Location: 33145-33378 bp Ori: ATX45327.1 Feature: domain Description: DUF905 Location: 33175-33373 bp Feature: domain Description: DUF905 Location: 3 3 175-3 3 3 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)