myRT

myRT report for GCA_002787315.1_ASM278731v1

Download annotations/find similar RTs

Seq: CP024860.1 Escherichia coli strain AR_0014 plasmid unitig_1_pilon, complete sequence (172588 bp)
Overview 1 RT 1: 58595-62250 bp Neighborhood of RT #1 [58595, 62650] autotrans_barl PHA02517 RVT-GII GIIM InsE Feature: gene Location: 58595-59164 bp Ori: ATX55057.1 Feature: domain Description: autotrans_barl Location: 58676-59111 bp Feature: domain Description: autotrans_barl Location: 58676-591 1 1 bp Feature: gene Location: 59167-59640 bp Feature: domain Description: PHA02517 Location: 59173-59638 bp Feature: domain Description: PHA0251 7 Location: 591 73-59638 bp Feature: gene Location: 59730-61253 bp Ori: ATX54947.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60003-60735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60003-60735 bp Feature: domain Description: GIIM Note: maturase Location: 60810-61008 bp Feature: domain Description: GIIM Note: maturase Location: 6081 0-61 008 bp Feature: gene Location: 61547-61918 bp Feature: gene Location: 61911-62650 bp Feature: domain Description: InsE Location: 61914-62250 bp Feature: domain Description: InsE Location: 61 91 4-62250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP024859.1 Escherichia coli strain AR_0014, complete genome (4839565 bp)
Overview 1 RT 1: 552027-557462 bp 2 RT 2: 1506373-1510124 bp 3 RT 3: 1920318-1923695 bp 4 RT 4: 1935265-1943060 bp 5 RT 5: 3139019-3142779 bp 6 RT 6: 3435102-3439393 bp 7 RT 7: 4506265-4512019 bp Neighborhood of RT #1 [552027, 557462] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1506373, 1510181] InsE RVT-GII GIIM PHA02517 SH3_2 SH3_2 Neighborhood of RT #3 [1920318, 1924124] COG2085 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [1935265, 1943167] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Neighborhood of RT #5 [3139019, 3142781] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #6 [3435102, 3439393] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #7 [4506265, 4512019] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 552027-552766 bp Feature: domain Description: InsE Location: 552030-552369 bp Feature: domain Description: InsE Location: 552 030-552 369 bp Feature: gene Location: 552759-553130 bp Feature: gene Location: 553424-554947 bp Ori: ATX50812.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553697-554429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553697-55442 9 bp Feature: domain Description: GIIM Note: maturase Location: 554504-554702 bp Feature: domain Description: GIIM Note: maturase Location: 554504-554702 bp Feature: gene Location: 555037-555510 bp Feature: domain Description: PHA02517 Location: 555043-555508 bp Feature: domain Description: PHA02 517 Location: 555043-555508 bp Feature: gene Location: 555552-557462 bp Feature: gene Location: 1506373-1507112 bp Feature: domain Description: InsE Location: 1506376-1506712 bp Feature: domain Description: InsE Location: 1506376-1506712 bp Feature: gene Location: 1507105-1507476 bp Feature: gene Location: 1507770-1509293 bp Ori: ATX51692.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508043-1508775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508043-1508775 bp Feature: domain Description: GIIM Note: maturase Location: 1508850-1509048 bp Feature: domain Description: GIIM Note: maturase Location: 1508850-1509048 bp Feature: gene Location: 1509383-1509856 bp Feature: domain Description: PHA02517 Location: 1509389-1509854 bp Feature: domain Description: PHA02 517 Location: 1509389-1509854 bp Feature: gene Location: 1509899-1510181 bp Feature: domain Description: SH3_2 Location: 1509914-1509977 bp Feature: domain Description: SH3_2 Location: 1509914-1509977 bp Feature: domain Description: SH3_2 Location: 1510007-1510124 bp Feature: domain Description: SH3_2 Location: 1510007-151012 4 bp Feature: gene Location: 1920318-1920731 bp Ori: ATX52050.1 Feature: domain Description: COG2085 Location: 1920417-1920564 bp Feature: domain Description: COG2 085 Location: 192 0417-192 0564 bp Feature: gene Location: 1920658-1921145 bp Feature: domain Description: PHA02517 Location: 1920661-1920832 bp Feature: domain Description: PHA02 517 Location: 192 0661-192 0832 bp Feature: gene Location: 1921226-1922749 bp Ori: ATX52051.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1921499-1922231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 1499-192 2 2 31 bp Feature: domain Description: GIIM Note: maturase Location: 1922306-1922504 bp Feature: domain Description: GIIM Note: maturase Location: 192 2 306-192 2 504 bp Feature: gene Location: 1923043-1923480 bp Feature: gene Location: 1923407-1924124 bp Feature: domain Description: InsE Location: 1923446-1923695 bp Feature: domain Description: InsE Location: 192 3446-192 3695 bp Feature: gene Location: 1935265-1936004 bp Feature: domain Description: InsE Location: 1935268-1935607 bp Feature: domain Description: InsE Location: 19352 68-1935607 bp Feature: gene Location: 1935997-1936368 bp Feature: gene Location: 1936662-1938185 bp Ori: ATX52065.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1936935-1937667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1936935-1937667 bp Feature: domain Description: GIIM Note: maturase Location: 1937742-1937940 bp Feature: domain Description: GIIM Note: maturase Location: 1937742 -1937940 bp Feature: gene Location: 1938275-1938748 bp Feature: domain Description: PHA02517 Location: 1938281-1938746 bp Feature: domain Description: PHA02 517 Location: 19382 81-1938746 bp Feature: gene Location: 1938751-1939892 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1938760-1939012 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1938760-1939012 bp Feature: gene Location: 1940347-1941279 bp Ori: ATX52066.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1940449-1941043 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1940449-1941043 bp Feature: gene Location: 1941281-1942249 bp Feature: gene Location: 1942895-1943167 bp Ori: ATX52068.1 Feature: domain Description: PRK09678 Location: 1942904-1943060 bp Feature: domain Description: PRK09678 Location: 1942 904-1943060 bp Feature: gene Location: 3139019-3139758 bp Feature: domain Description: InsE Location: 3139022-3139361 bp Feature: domain Description: InsE Location: 313902 2 -3139361 bp Feature: gene Location: 3139751-3140122 bp Feature: gene Location: 3140416-3141939 bp Ori: ATX53159.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3140689-3141421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3140689-314142 1 bp Feature: domain Description: GIIM Note: maturase Location: 3141496-3141694 bp Feature: domain Description: GIIM Note: maturase Location: 3141496-3141694 bp Feature: gene Location: 3142029-3142502 bp Feature: domain Description: PHA02517 Location: 3142035-3142500 bp Feature: domain Description: PHA02 517 Location: 3142 035-3142 500 bp Feature: gene Location: 3142545-3142781 bp Feature: domain Description: DUF1016_N Location: 3142602-3142779 bp Feature: domain Description: DUF1016_N Location: 3142 602 -3142 779 bp Feature: gene Location: 3435102-3436331 bp Ori: ATX53437.1 Feature: domain Description: YesM Location: 3435582-3436323 bp Feature: domain Description: YesM Location: 3435582 -343632 3 bp Feature: gene Location: 3436404-3436592 bp Feature: gene Location: 3436914-3437435 bp Ori: ATX53439.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3436920-3437202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343692 0-34372 02 bp Feature: domain Description: GIIM Note: maturase Location: 3437250-3437430 bp Feature: domain Description: GIIM Note: maturase Location: 34372 50-3437430 bp Feature: gene Location: 3437463-3438002 bp Ori: ATX53440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437793-3437871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437793-3437871 bp Feature: gene Location: 3438227-3438514 bp Feature: gene Location: 3438488-3439393 bp Feature: gene Location: 4506265-4506759 bp Ori: ATX54875.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 4506409-4506583 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 4506409-4506583 bp Feature: gene Location: 4506779-4506934 bp Feature: gene Location: 4507415-4508515 bp Ori: ATX54377.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4507598-4508126 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4507598-450812 6 bp Feature: gene Location: 4508630-4510906 bp Ori: ATX54378.1 Feature: domain Description: AAA_15 Location: 4508663-4509671 bp Feature: domain Description: AAA_15 Location: 4508663-4509671 bp Feature: gene Location: 4511789-4512019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), SH3_2 (pfam07653), COG2085 (Predicted dinucleotide-binding enzyme ), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), DUF1016_N (pfam17761)
YesM (COG2972), Nuc_deoxyrib_tr (pfam05014), AAA_15 (pfam13175)