myRT

myRT report for GCA_002787545.1_ASM278754v1

Download annotations/find similar RTs

Seq: CP024815.1 Escherichia coli strain CREC-629 chromosome, complete genome (4938993 bp)
Overview 1 RT 1: 18227-21604 bp 2 RT 2: 40862-44239 bp 3 RT 3: 1205626-1209386 bp 4 RT 4: 1503685-1507976 bp 5 RT 5: 2618670-2623043 bp 6 RT 6: 3461697-3467132 bp 7 RT 7: 4479487-4488465 bp 8 RT 8: 4934571-4938157 bp Neighborhood of RT #1 [18227, 22033] COG2085 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [40862, 44668] COG2085 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [1205626, 1209388] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #4 [1503685, 1507976] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #5 [2618670, 2623042] YkfC InsG RVT-GII GIIM PHA02517 PRK10002 Neighborhood of RT #6 [3461697, 3467132] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #7 [4479487, 4488856] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII InsE Neighborhood of RT #8 [4934571, 4938374] COG2085 PHA02517 RVT-GII InsE PHA02517 Feature: gene Location: 18227-18640 bp Ori: ATW95107.1 Feature: domain Description: COG2085 Location: 18326-18473 bp Feature: domain Description: COG2085 Location: 1 8326-1 8473 bp Feature: gene Location: 18567-19054 bp Feature: domain Description: PHA02517 Location: 18570-18741 bp Feature: domain Description: PHA0251 7 Location: 1 8570-1 8741 bp Feature: gene Location: 19135-20658 bp Ori: ATW95108.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19408-20140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9408-201 40 bp Feature: domain Description: GIIM Note: maturase Location: 20215-20413 bp Feature: domain Description: GIIM Note: maturase Location: 2021 5-2041 3 bp Feature: gene Location: 20952-21389 bp Feature: gene Location: 21316-22033 bp Feature: domain Description: InsE Location: 21355-21604 bp Feature: domain Description: InsE Location: 21 355-21 604 bp Feature: gene Location: 40862-41275 bp Ori: ATW95126.1 Feature: domain Description: COG2085 Location: 40961-41108 bp Feature: domain Description: COG2085 Location: 40961 -41 1 08 bp Feature: gene Location: 41202-41689 bp Feature: domain Description: PHA02517 Location: 41205-41376 bp Feature: domain Description: PHA0251 7 Location: 41 205-41 376 bp Feature: gene Location: 41770-43293 bp Ori: ATW95127.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42043-42775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42043-42775 bp Feature: domain Description: GIIM Note: maturase Location: 42850-43048 bp Feature: domain Description: GIIM Note: maturase Location: 42850-43048 bp Feature: gene Location: 43587-44024 bp Feature: gene Location: 43951-44668 bp Feature: domain Description: InsE Location: 43990-44239 bp Feature: domain Description: InsE Location: 43990-44239 bp Feature: gene Location: 1205626-1206365 bp Feature: domain Description: InsE Location: 1205629-1205968 bp Feature: domain Description: InsE Location: 1 205629-1 205968 bp Feature: gene Location: 1206358-1206729 bp Feature: gene Location: 1207023-1208546 bp Ori: ATW96169.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1207296-1208028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 207296-1 208028 bp Feature: domain Description: GIIM Note: maturase Location: 1208103-1208301 bp Feature: domain Description: GIIM Note: maturase Location: 1 2081 03-1 208301 bp Feature: gene Location: 1208636-1209109 bp Feature: domain Description: PHA02517 Location: 1208642-1209107 bp Feature: domain Description: PHA0251 7 Location: 1 208642-1 2091 07 bp Feature: gene Location: 1209152-1209388 bp Feature: domain Description: DUF1016_N Location: 1209209-1209386 bp Feature: domain Description: DUF1 01 6_N Location: 1 209209-1 209386 bp Feature: gene Location: 1503685-1504914 bp Ori: ATW96448.1 Feature: domain Description: YesM Location: 1504165-1504906 bp Feature: domain Description: YesM Location: 1 5041 65-1 504906 bp Feature: gene Location: 1504987-1505175 bp Feature: gene Location: 1505497-1506018 bp Ori: ATW96450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505503-1505785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 505503-1 505785 bp Feature: domain Description: GIIM Note: maturase Location: 1505833-1506013 bp Feature: domain Description: GIIM Note: maturase Location: 1 505833-1 50601 3 bp Feature: gene Location: 1506194-1506585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506524-1506584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 506524-1 506584 bp Feature: gene Location: 1506810-1507097 bp Feature: gene Location: 1507071-1507976 bp Feature: gene Location: 2618670-2618825 bp Ori: ATW97406.1 Feature: domain Description: YkfC Location: 2618679-2618820 bp Feature: domain Description: YkfC Location: 261 8679-261 8820 bp Feature: gene Location: 2618992-2620104 bp Ori: ATW97407.1 Feature: domain Description: InsG Location: 2618995-2620033 bp Feature: domain Description: InsG Location: 261 8995-2620033 bp Feature: gene Location: 2620161-2621543 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620293-2621025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620293-2621 025 bp Feature: domain Description: GIIM Note: maturase Location: 2621100-2621298 bp Feature: domain Description: GIIM Note: maturase Location: 2621 1 00-2621 298 bp Feature: gene Location: 2621624-2622112 bp Feature: domain Description: PHA02517 Location: 2621627-2622101 bp Feature: domain Description: PHA0251 7 Location: 2621 627-26221 01 bp Feature: gene Location: 2622122-2623042 bp Feature: domain Description: PRK10002 Location: 2622125-2623043 bp Feature: domain Description: PRK1 0002 Location: 26221 25-2623043 bp Feature: gene Location: 3461697-3462436 bp Feature: domain Description: InsE Location: 3461700-3462039 bp Feature: domain Description: InsE Location: 3461 700-3462039 bp Feature: gene Location: 3462429-3462800 bp Feature: gene Location: 3463094-3464617 bp Ori: ATW98199.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3463367-3464099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3463367-3464099 bp Feature: domain Description: GIIM Note: maturase Location: 3464174-3464372 bp Feature: domain Description: GIIM Note: maturase Location: 34641 74-3464372 bp Feature: gene Location: 3464707-3465180 bp Feature: domain Description: PHA02517 Location: 3464713-3465178 bp Feature: domain Description: PHA0251 7 Location: 346471 3-34651 78 bp Feature: gene Location: 3465222-3467132 bp Feature: gene Location: 4479487-4485222 bp Ori: ATW99151.1 Feature: domain Description: DUF4011 Location: 4479577-4480411 bp Feature: domain Description: DUF401 1 Location: 4479577-448041 1 bp Feature: domain Description: DEXXQc_SF1 Location: 4480768-4483870 bp Feature: domain Description: DEXXQc_SF1 Location: 4480768-4483870 bp Feature: domain Description: SF1_C_Upf1 Location: 4483879-4484407 bp Feature: domain Description: SF1 _C_Upf1 Location: 4483879-4484407 bp Feature: domain Description: MTES_1575 Location: 4484536-4484827 bp Feature: domain Description: MTES_1 575 Location: 4484536-4484827 bp Feature: gene Location: 4485443-4485901 bp Feature: domain Description: PHA02517 Location: 4485446-4485893 bp Feature: domain Description: PHA0251 7 Location: 4485446-4485893 bp Feature: gene Location: 4485982-4487459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4486255-4486330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4486255-4486330 bp Feature: gene Location: 4487753-4488124 bp Feature: gene Location: 4488117-4488856 bp Feature: domain Description: InsE Location: 4488120-4488465 bp Feature: domain Description: InsE Location: 44881 20-4488465 bp Feature: gene Location: 4934571-4934984 bp Ori: ATW99553.1 Feature: domain Description: COG2085 Location: 4934670-4934817 bp Feature: domain Description: COG2085 Location: 4934670-493481 7 bp Feature: gene Location: 4934911-4935398 bp Feature: domain Description: PHA02517 Location: 4934914-4935085 bp Feature: domain Description: PHA0251 7 Location: 493491 4-4935085 bp Feature: gene Location: 4935479-4937001 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4935752-4936208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4935752-4936208 bp Feature: gene Location: 4937295-4937732 bp Feature: gene Location: 4937659-4938374 bp Feature: domain Description: InsE Location: 4937698-4937872 bp Feature: domain Description: InsE Location: 4937698-4937872 bp Feature: domain Description: PHA02517 Location: 4938040-4938157 bp Feature: domain Description: PHA0251 7 Location: 4938040-49381 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), DUF1016_N (pfam17761), YesM (COG2972), YkfC (COG3344), InsG (COG3385), PRK10002 (porin OmpF)
DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)