myRT

myRT report for GCA_002787755.1_ASM278775v1

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Seq: CP024836.1 Klebsiella pneumoniae strain CRKP-2297 plasmid pCRKP-2297_2, complete sequence (96185 bp)
Overview 1 RT 1: 24862-28468 bp 2 RT 2: 43010-48018 bp Neighborhood of RT #1 [24862, 28590] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [43010, 48020] DHFR_1 PRK13746 RVT-GII GIIM Multi_Drug_Res PRK13753 Feature: gene Location: 24862-25119 bp Feature: gene Location: 25087-25262 bp Feature: gene Location: 25999-27666 bp Ori: ATX27730.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26047-26284 bp Feature: domain Description: RVT_N Location: 26047-26284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26335-26977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26335-26977 bp Feature: domain Description: GIIM Note: maturase Location: 27028-27262 bp Feature: domain Description: GIIM Note: maturase Location: 27028-27262 bp Feature: domain Description: HNHc Note: nucleases Location: 27472-27631 bp Feature: domain Description: HNHc Note: nucleases Location: 27472-27631 bp Feature: gene Location: 27980-28171 bp Feature: gene Location: 28168-28590 bp Ori: ATX27732.1 Feature: domain Description: DUF1380 Location: 28171-28468 bp Feature: domain Description: DUF1 380 Location: 281 71 -28468 bp Feature: gene Location: 43010-43507 bp Ori: ATX27744.1 Feature: domain Description: DHFR_1 Location: 43034-43481 bp Feature: domain Description: DHFR_1 Location: 43034-43481 bp Feature: gene Location: 43915-44706 bp Ori: ATX27745.1 Feature: domain Description: PRK13746 Location: 43918-44698 bp Feature: domain Description: PRK1 3746 Location: 4391 8-44698 bp Feature: gene Location: 44782-46035 bp Ori: ATX27746.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44974-45598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44974-45598 bp Feature: domain Description: GIIM Note: maturase Location: 45637-45856 bp Feature: domain Description: GIIM Note: maturase Location: 45637-45856 bp Feature: gene Location: 46840-47187 bp Ori: ATX27747.1 Feature: domain Description: Multi_Drug_Res Location: 46849-47122 bp Feature: domain Description: Multi_Drug_Res Location: 46849-471 22 bp Feature: gene Location: 47181-48020 bp Ori: ATX27748.1 Feature: domain Description: PRK13753 Location: 47184-48018 bp Feature: domain Description: PRK1 3753 Location: 471 84-4801 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), DHFR_1 (pfam00186), PRK13746 (aminoglycoside resistance protein; Provisional), Multi_Drug_Res (pfam00893), PRK13753 (dihydropteroate synthase; Provisional)

Seq: CP024834.1 Klebsiella pneumoniae strain CRKP-2297 chromosome, complete genome (5429958 bp)
Overview 1 RT 1: 185996-189056 bp 2 RT 2: 1961608-1967140 bp 3 RT 3: 2125957-2130590 bp 4 RT 4: 2645602-2650485 bp 5 RT 5: 4926516-4932526 bp Neighborhood of RT #1 [185996, 189056] DinI HTH_XRE RVT-Retrons Neighborhood of RT #2 [1961608, 1967169] AraJ PRK10543 RVT-GII GIIM PRK10219 Spr Neighborhood of RT #3 [2125957, 2130592] N6_acetyl_AAC6 RVT-GII GIIM Arr-ms PRK15417 Neighborhood of RT #4 [2645602, 2650487] PRK15110 PRK09951 RVT-UG11 umuC Neighborhood of RT #5 [4926516, 4932528] PRK11115 RVT-GII GIIM Sugarporin_N LamB Fes Feature: gene Location: 185996-186436 bp Ori: ATX22584.1 Feature: domain Description: DinI Location: 186251-186434 bp Feature: domain Description: DinI Location: 1862 51-186434 bp Feature: gene Location: 187057-187365 bp Ori: ATX22585.1 Feature: domain Description: HTH_XRE Location: 187069-187234 bp Feature: domain Description: HTH_XRE Location: 187069-1872 34 bp Feature: gene Location: 187343-188293 bp Ori: ATX22586.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 187523-188066 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18752 3-188066 bp Feature: gene Location: 188432-188863 bp Feature: gene Location: 188862-189056 bp Feature: gene Location: 1961608-1962774 bp Ori: ATX24211.1 Feature: domain Description: AraJ Location: 1961617-1962754 bp Feature: domain Description: AraJ Location: 1961617-1962 754 bp Feature: gene Location: 1962836-1963417 bp Ori: ATX24212.1 Feature: domain Description: PRK10543 Location: 1962839-1963415 bp Feature: domain Description: PRK10543 Location: 1962 839-1963415 bp Feature: gene Location: 1964090-1965343 bp Ori: ATX24213.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1964282-1964906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19642 82 -1964906 bp Feature: domain Description: GIIM Note: maturase Location: 1964945-1965164 bp Feature: domain Description: GIIM Note: maturase Location: 1964945-1965164 bp Feature: gene Location: 1965857-1966342 bp Ori: ATX24214.1 Feature: domain Description: PRK10219 Location: 1965902-1966199 bp Feature: domain Description: PRK102 19 Location: 1965902 -1966199 bp Feature: gene Location: 1966297-1967169 bp Ori: ATX24215.1 Feature: domain Description: Spr Location: 1966327-1967140 bp Feature: domain Description: Spr Location: 196632 7-1967140 bp Feature: gene Location: 2125957-2126115 bp Feature: gene Location: 2126345-2126899 bp Ori: ATX24370.1 Gene: aacA4 Feature: domain Description: N6_acetyl_AAC6 Location: 2126351-2126897 bp Feature: domain Description: N6_acetyl_AAC6 Location: 2 12 6351-2 12 6897 bp Feature: gene Location: 2127620-2128873 bp Ori: ATX24371.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127812-2128436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 7812 -2 12 8436 bp Feature: domain Description: GIIM Note: maturase Location: 2128475-2128694 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 8475-2 12 8694 bp Feature: gene Location: 2128954-2129406 bp Ori: ATX24372.1 Feature: domain Description: Arr-ms Location: 2129014-2129320 bp Feature: domain Description: Arr-ms Location: 2 12 9014-2 12 932 0 bp Feature: gene Location: 2129579-2130592 bp Ori: ATX24373.1 Feature: domain Description: PRK15417 Location: 2129582-2130590 bp Feature: domain Description: PRK15417 Location: 2 12 9582 -2 130590 bp Feature: gene Location: 2645602-2646567 bp Ori: ATX24863.1 Feature: domain Description: PRK15110 Location: 2645605-2646565 bp Feature: domain Description: PRK15110 Location: 2 645605-2 646565 bp Feature: gene Location: 2646772-2647440 bp Ori: ATX24864.1 Feature: domain Description: PRK09951 Location: 2646775-2647438 bp Feature: domain Description: PRK09951 Location: 2 646775-2 647438 bp Feature: gene Location: 2647641-2648270 bp Ori: ATX27453.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2647644-2648091 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 647644-2 648091 bp Feature: gene Location: 2648809-2649066 bp Feature: gene Location: 2649222-2650487 bp Ori: ATX24866.1 Feature: domain Description: umuC Location: 2649225-2650485 bp Feature: domain Description: umuC Location: 2 6492 2 5-2 650485 bp Feature: gene Location: 4926516-4927241 bp Ori: ATX26892.1 Gene: phoU Feature: domain Description: PRK11115 Location: 4926519-4927221 bp Feature: domain Description: PRK11115 Location: 492 6519-492 72 2 1 bp Feature: gene Location: 4927410-4927589 bp Feature: gene Location: 4928240-4929493 bp Ori: ATX26893.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4928432-4929056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 8432 -492 9056 bp Feature: domain Description: GIIM Note: maturase Location: 4929095-4929314 bp Feature: domain Description: GIIM Note: maturase Location: 492 9095-492 9314 bp Feature: gene Location: 4929689-4931323 bp Ori: ATX26894.1 Feature: domain Description: Sugarporin_N Location: 4929695-4929860 bp Feature: domain Description: Sugarporin_N Location: 492 9695-492 9860 bp Feature: domain Description: LamB Location: 4930010-4931321 bp Feature: domain Description: LamB Location: 4930010-493132 1 bp Feature: gene Location: 4931362-4932528 bp Ori: ATX26895.1 Feature: domain Description: Fes Location: 4931614-4932526 bp Feature: domain Description: Fes Location: 4931614-4932 52 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), HTH_XRE (smart00530), RVT-Retrons, AraJ (COG2814), PRK10543 (superoxide dismutase ), RVT-GII, GIIM (pfam08388), PRK10219 (superoxide response transcriptional regulator SoxS), Spr (COG0791), N6_acetyl_AAC6 (TIGR04431)
Arr-ms (pfam12120), PRK15417 (integron integrase), PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609), PRK11115 (phosphate signaling complex protein PhoU), Sugarporin_N (pfam11471), LamB (smart00281), Fes (COG2382)

Seq: CP024835.1 Klebsiella pneumoniae strain CRKP-2297 plasmid pCRKP-2297_1, complete sequence (112150 bp)
Overview 1 RT 1: 85442-89661 bp Neighborhood of RT #1 [85442, 89663] MobC RVT-GII GIIM Arr-ms PRK15417 Feature: gene Location: 85442-85597 bp Feature: gene Location: 85556-85822 bp Ori: ATX27670.1 Feature: domain Description: MobC Location: 85607-85727 bp Feature: domain Description: MobC Location: 85607-85727 bp Feature: gene Location: 86691-87944 bp Ori: ATX27671.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86883-87507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86883 -87507 bp Feature: domain Description: GIIM Note: maturase Location: 87546-87765 bp Feature: domain Description: GIIM Note: maturase Location: 87546-87765 bp Feature: gene Location: 88025-88477 bp Ori: ATX27672.1 Feature: domain Description: Arr-ms Location: 88085-88391 bp Feature: domain Description: Arr-ms Location: 88085-883 91 bp Feature: gene Location: 88650-89663 bp Ori: ATX27673.1 Feature: domain Description: PRK15417 Location: 88653-89661 bp Feature: domain Description: PRK15417 Location: 88653 -89661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), RVT-GII, GIIM (pfam08388), Arr-ms (pfam12120), PRK15417 (integron integrase)