myRT

myRT report for GCA_002787935.1_ASM278793v1

Download annotations/find similar RTs

Seq: CP024821.1 Escherichia coli strain CREC-591 chromosome, complete genome (5125266 bp)
Overview 1 RT 1: 3723201-3728665 bp 2 RT 2: 5015771-5019752 bp Neighborhood of RT #1 [3723201, 3728673] InsE RVT-GII GIIM PHA02517 LldP Neighborhood of RT #2 [5015771, 5019778] Asparaginase_2 RVT-GII RVT-GII DcuC Feature: gene Location: 3723201-3723940 bp Feature: domain Description: InsE Location: 3723204-3723540 bp Feature: domain Description: InsE Location: 3723204-3723540 bp Feature: gene Location: 3723933-3724304 bp Feature: gene Location: 3724598-3726121 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3724871-3725603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3724871 -3725603 bp Feature: domain Description: GIIM Note: maturase Location: 3725678-3725876 bp Feature: domain Description: GIIM Note: maturase Location: 3725678-3725876 bp Feature: gene Location: 3726202-3726690 bp Feature: domain Description: PHA02517 Location: 3726205-3726679 bp Feature: domain Description: PHA0251 7 Location: 3726205-3726679 bp Feature: gene Location: 3727120-3728673 bp Ori: ATX10742.1 Feature: domain Description: LldP Location: 3727132-3728665 bp Feature: domain Description: LldP Location: 37271 32-3728665 bp Feature: gene Location: 5015771-5016802 bp Ori: ATX11896.1 Feature: domain Description: Asparaginase_2 Location: 5015861-5016794 bp Feature: domain Description: Asparaginase_2 Location: 501 5861 -501 6794 bp Feature: gene Location: 5016960-5017161 bp Feature: gene Location: 5017209-5017373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017212-5017368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 721 2-501 7368 bp Feature: gene Location: 5017325-5017771 bp Ori: ATX11897.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017631-5017733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 7631 -501 7733 bp Feature: gene Location: 5018137-5018364 bp Feature: gene Location: 5018417-5019778 bp Ori: ATX11898.1 Feature: domain Description: DcuC Location: 5018420-5019752 bp Feature: domain Description: DcuC Location: 501 8420-501 9752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), LldP (COG1620), Asparaginase_2 (pfam01112), DcuC (TIGR00771)

Seq: CP024822.1 Escherichia coli strain CREC-591 plasmid pCREC-591_1, complete sequence (118156 bp)
Overview 1 RT 1: 24830-28489 bp Neighborhood of RT #1 [24830, 28491] RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 24830-24928 bp Feature: gene Location: 24966-25151 bp Feature: gene Location: 25129-26796 bp Ori: ATX12249.1 Gene: ltrA Feature: domain Description: RVT_N Location: 25177-25414 bp Feature: domain Description: RVT_N Location: 2 5177-2 5414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25465-26107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5465-2 6107 bp Feature: domain Description: GIIM Note: maturase Location: 26158-26392 bp Feature: domain Description: GIIM Note: maturase Location: 2 6158-2 6392 bp Feature: domain Description: HNHc Note: nucleases Location: 26602-26761 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6602 -2 6761 bp Feature: gene Location: 27761-27967 bp Feature: gene Location: 27964-28491 bp Ori: ATX12251.1 Feature: domain Description: PRK13732 Location: 27967-28489 bp Feature: domain Description: PRK13732 Location: 2 7967-2 8489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)