myRT

myRT report for GCA_002788115.1_ASM278811v1

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Seq: CP024862.1 Escherichia coli strain AR_0015, complete genome (5107874 bp)
Overview 1 RT 1: 2954254-2958545 bp 2 RT 2: 2984040-2987597 bp 3 RT 3: 3604933-3611176 bp 4 RT 4: 4350500-4355078 bp Neighborhood of RT #1 [2954254, 2958545] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [2984040, 2987622] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [3604933, 3611313] RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #4 [4350500, 4355086] HTH_XRE RVT-Retrons FRG Q Feature: gene Location: 2954254-2955483 bp Ori: ATX59916.1 Feature: domain Description: YesM Location: 2954734-2955475 bp Feature: domain Description: YesM Location: 2954734-2955475 bp Feature: gene Location: 2955556-2955744 bp Feature: gene Location: 2956066-2956587 bp Ori: ATX57808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2956072-2956354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2956072-2956354 bp Feature: domain Description: GIIM Note: maturase Location: 2956402-2956582 bp Feature: domain Description: GIIM Note: maturase Location: 2956402-2956582 bp Feature: gene Location: 2956615-2957154 bp Ori: ATX57809.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2956945-2957023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2956945-2957023 bp Feature: gene Location: 2957379-2957666 bp Feature: gene Location: 2957640-2958545 bp Feature: gene Location: 2984040-2984423 bp Feature: domain Description: PHA02517 Location: 2984070-2984424 bp Feature: domain Description: PHA0251 7 Location: 2984070-2984424 bp Feature: gene Location: 2984416-2984787 bp Feature: gene Location: 2985081-2986604 bp Ori: ATX57836.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985354-2986086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985354-2986086 bp Feature: domain Description: GIIM Note: maturase Location: 2986161-2986359 bp Feature: domain Description: GIIM Note: maturase Location: 29861 61 -2986359 bp Feature: gene Location: 2986694-2987167 bp Feature: domain Description: PHA02517 Location: 2986700-2987165 bp Feature: domain Description: PHA0251 7 Location: 2986700-29871 65 bp Feature: gene Location: 2987303-2987622 bp Feature: domain Description: InsE Location: 2987312-2987597 bp Feature: domain Description: InsE Location: 298731 2-2987597 bp Feature: gene Location: 3604933-3605091 bp Feature: gene Location: 3605282-3605752 bp Feature: gene Location: 3606099-3609308 bp Ori: ATX58400.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3606627-3607116 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3606627-36071 1 6 bp Feature: domain Description: nitrilase Location: 3608622-3609219 bp Feature: domain Description: nitrilase Location: 3608622-360921 9 bp Feature: gene Location: 3609603-3610406 bp Ori: ATX58401.1 Feature: domain Description: AbiEi_3_N Location: 3609636-3609897 bp Feature: domain Description: AbiEi_3_N Location: 3609636-3609897 bp Feature: domain Description: AbiEi_3 Location: 3609909-3610365 bp Feature: domain Description: AbiEi_3 Location: 3609909-361 0365 bp Feature: gene Location: 3610393-3611313 bp Ori: ATX58402.1 Feature: domain Description: AbiEii Location: 3610435-3611176 bp Feature: domain Description: AbiEii Location: 361 0435-361 1 1 76 bp Feature: gene Location: 4350500-4350793 bp Feature: gene Location: 4350830-4351150 bp Ori: ATX59068.1 Feature: domain Description: HTH_XRE Location: 4350845-4351004 bp Feature: domain Description: HTH_XRE Location: 4350845-4351 004 bp Feature: gene Location: 4351116-4352066 bp Ori: ATX59069.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4351296-4351839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4351 296-4351 839 bp Feature: gene Location: 4352175-4353539 bp Ori: ATX59070.1 Feature: domain Description: FRG Location: 4352742-4353027 bp Feature: domain Description: FRG Location: 4352742-4353027 bp Feature: gene Location: 4354052-4355086 bp Ori: ATX59071.1 Feature: domain Description: Q Location: 4354055-4355078 bp Feature: domain Description: Q Location: 4354055-4355078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)
HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901), Q (PHA02536)

Seq: CP024864.1 Escherichia coli strain AR_0015 plasmid unitig_2_pilon, complete sequence (88768 bp)
Overview 1 RT 1: 54803-58564 bp Neighborhood of RT #1 [54803, 58569] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 54803-55031 bp Feature: gene Location: 54973-55185 bp Feature: gene Location: 55748-57649 bp Ori: ATX60204.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56015-56846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56015-56846 bp Feature: domain Description: Intron_maturas2 Location: 56960-57218 bp Feature: domain Description: Intron_maturas2 Location: 56960-572 18 bp Feature: domain Description: HNHc Note: nucleases Location: 57392-57554 bp Feature: domain Description: HNHc Note: nucleases Location: 57392 -57554 bp Feature: gene Location: 57799-58278 bp Ori: ATX60205.1 Feature: domain Description: PRK13732 Location: 57802-58276 bp Feature: domain Description: PRK13732 Location: 57802 -582 76 bp Feature: gene Location: 58336-58569 bp Ori: ATX60206.1 Feature: domain Description: DUF905 Location: 58366-58564 bp Feature: domain Description: DUF905 Location: 58366-58564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP024863.1 Escherichia coli strain AR_0015 plasmid unitig_1_pilon, complete sequence (139059 bp)
Overview 1 RT 1: 17520-21438 bp Neighborhood of RT #1 [17520, 21438] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 17520-17753 bp Ori: ATX60030.1 Feature: domain Description: DUF905 Location: 17550-17748 bp Feature: domain Description: DUF905 Location: 17550-17748 bp Feature: gene Location: 17816-18313 bp Ori: ATX60031.1 Feature: domain Description: PRK13732 Location: 17819-18311 bp Feature: domain Description: PRK13 73 2 Location: 17819-183 11 bp Feature: gene Location: 18463-20364 bp Ori: ATX60032.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18730-19561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873 0-19561 bp Feature: domain Description: Intron_maturas2 Location: 19675-19933 bp Feature: domain Description: Intron_maturas2 Location: 19675-1993 3 bp Feature: domain Description: HNHc Note: nucleases Location: 20107-20269 bp Feature: domain Description: HNHc Note: nucleases Location: 20107-20269 bp Feature: gene Location: 21042-21248 bp Feature: gene Location: 21250-21438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)