myRT

myRT report for GCA_002788295.1_ASM278829v1

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Seq: CP024855.1 Escherichia coli strain AR_0011, complete genome (4856773 bp)
Overview 1 RT 1: 671265-676303 bp 2 RT 2: 1556273-1561851 bp 3 RT 3: 2627758-2633098 bp 4 RT 4: 2924370-2927735 bp 5 RT 5: 4124044-4131549 bp 6 RT 6: 4143087-4146726 bp 7 RT 7: 4557030-4560438 bp Neighborhood of RT #1 [671265, 676700] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [1556273, 1562027] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Neighborhood of RT #3 [2627758, 2633121] RVT-GII RVT-GII GIIM YesM YesN YesN Neighborhood of RT #4 [2924370, 2928132] DUF1016_N PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [4124044, 4131946] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4143087, 4146893] InsE RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #7 [4557030, 4560838] SH3_2 SH3_2 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 671265-673175 bp Feature: gene Location: 673217-673690 bp Feature: domain Description: PHA02517 Location: 673223-673688 bp Feature: domain Description: PHA0251 7 Location: 673223-673688 bp Feature: gene Location: 673780-675303 bp Ori: ATX46026.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674053-674785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674053-674785 bp Feature: domain Description: GIIM Note: maturase Location: 674860-675058 bp Feature: domain Description: GIIM Note: maturase Location: 674860-675058 bp Feature: gene Location: 675597-675968 bp Feature: gene Location: 675961-676700 bp Feature: domain Description: InsE Location: 675964-676303 bp Feature: domain Description: InsE Location: 675964-676303 bp Feature: gene Location: 1556273-1556503 bp Feature: gene Location: 1557386-1559662 bp Ori: ATX46833.1 Feature: domain Description: AAA_15 Location: 1557419-1558427 bp Feature: domain Description: AAA_1 5 Location: 1 55741 9-1 558427 bp Feature: gene Location: 1559777-1560877 bp Ori: ATX46834.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1559960-1560488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 559960-1 560488 bp Feature: gene Location: 1561358-1561513 bp Feature: gene Location: 1561533-1562027 bp Ori: ATX49876.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1561677-1561851 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 561 677-1 561 851 bp Feature: gene Location: 2627758-2628663 bp Feature: gene Location: 2628637-2628924 bp Feature: gene Location: 2629149-2629688 bp Ori: ATX47772.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629479-2629557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629479-2629557 bp Feature: gene Location: 2629716-2630237 bp Ori: ATX47773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629722-2630004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629722-2630004 bp Feature: domain Description: GIIM Note: maturase Location: 2630052-2630232 bp Feature: domain Description: GIIM Note: maturase Location: 2630052-2630232 bp Feature: gene Location: 2630820-2632049 bp Ori: ATX47774.1 Feature: domain Description: YesM Location: 2631300-2632041 bp Feature: domain Description: YesM Location: 2631 300-2632041 bp Feature: gene Location: 2632066-2633121 bp Ori: ATX47775.1 Feature: domain Description: YesN Location: 2632069-2632459 bp Feature: domain Description: YesN Location: 2632069-2632459 bp Feature: domain Description: YesN Location: 2632801-2633098 bp Feature: domain Description: YesN Location: 2632801 -2633098 bp Feature: gene Location: 2924370-2924606 bp Feature: domain Description: DUF1016_N Location: 2924427-2924604 bp Feature: domain Description: DUF1 01 6_N Location: 2924427-2924604 bp Feature: gene Location: 2924649-2925122 bp Feature: domain Description: PHA02517 Location: 2924655-2925120 bp Feature: domain Description: PHA0251 7 Location: 2924655-29251 20 bp Feature: gene Location: 2925212-2926735 bp Ori: ATX48055.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925485-2926217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2925485-292621 7 bp Feature: domain Description: GIIM Note: maturase Location: 2926292-2926490 bp Feature: domain Description: GIIM Note: maturase Location: 2926292-2926490 bp Feature: gene Location: 2927029-2927400 bp Feature: gene Location: 2927393-2928132 bp Feature: domain Description: InsE Location: 2927396-2927735 bp Feature: domain Description: InsE Location: 2927396-2927735 bp Feature: gene Location: 4124044-4124316 bp Ori: ATX49154.1 Feature: domain Description: PRK09678 Location: 4124053-4124209 bp Feature: domain Description: PRK09678 Location: 41 24053-41 24209 bp Feature: gene Location: 4124962-4125930 bp Feature: gene Location: 4125932-4126864 bp Ori: ATX49156.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4126034-4126628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 26034-41 26628 bp Feature: gene Location: 4127319-4128460 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4127328-4127580 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 27328-41 27580 bp Feature: gene Location: 4128463-4128936 bp Feature: domain Description: PHA02517 Location: 4128469-4128934 bp Feature: domain Description: PHA0251 7 Location: 41 28469-41 28934 bp Feature: gene Location: 4129026-4130549 bp Ori: ATX49157.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4129299-4130031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 29299-41 30031 bp Feature: domain Description: GIIM Note: maturase Location: 4130106-4130304 bp Feature: domain Description: GIIM Note: maturase Location: 41 301 06-41 30304 bp Feature: gene Location: 4130843-4131214 bp Feature: gene Location: 4131207-4131946 bp Feature: domain Description: InsE Location: 4131210-4131549 bp Feature: domain Description: InsE Location: 41 31 21 0-41 31 549 bp Feature: gene Location: 4143087-4143804 bp Feature: domain Description: InsE Location: 4143126-4143375 bp Feature: domain Description: InsE Location: 41 431 26-41 43375 bp Feature: gene Location: 4143731-4144168 bp Feature: gene Location: 4144462-4145985 bp Ori: ATX49171.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4144735-4145467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 44735-41 45467 bp Feature: domain Description: GIIM Note: maturase Location: 4145542-4145740 bp Feature: domain Description: GIIM Note: maturase Location: 41 45542-41 45740 bp Feature: gene Location: 4146066-4146553 bp Feature: domain Description: PHA02517 Location: 4146069-4146240 bp Feature: domain Description: PHA0251 7 Location: 41 46069-41 46240 bp Feature: gene Location: 4146480-4146893 bp Ori: ATX49172.1 Feature: domain Description: COG2085 Location: 4146579-4146726 bp Feature: domain Description: COG2085 Location: 41 46579-41 46726 bp Feature: gene Location: 4557030-4557312 bp Feature: domain Description: SH3_2 Location: 4557045-4557108 bp Feature: domain Description: SH3_2 Location: 4557045-45571 08 bp Feature: domain Description: SH3_2 Location: 4557138-4557255 bp Feature: domain Description: SH3_2 Location: 45571 38-4557255 bp Feature: gene Location: 4557355-4557828 bp Feature: domain Description: PHA02517 Location: 4557361-4557826 bp Feature: domain Description: PHA0251 7 Location: 4557361 -4557826 bp Feature: gene Location: 4557918-4559441 bp Ori: ATX49528.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4558191-4558923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45581 91 -4558923 bp Feature: domain Description: GIIM Note: maturase Location: 4558998-4559196 bp Feature: domain Description: GIIM Note: maturase Location: 4558998-45591 96 bp Feature: gene Location: 4559735-4560106 bp Feature: gene Location: 4560099-4560838 bp Feature: domain Description: InsE Location: 4560102-4560438 bp Feature: domain Description: InsE Location: 45601 02-4560438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), YesM (COG2972), YesN (COG4753), DUF1016_N (pfam17761)
PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356), COG2085 (Predicted dinucleotide-binding enzyme ), SH3_2 (pfam07653)

Seq: CP024857.1 Escherichia coli strain AR_0011 plasmid tig00001069_pilon, complete sequence (76680 bp)
Overview 1 RT 1: 26480-29557 bp 2 RT 2: 39641-43094 bp 3 RT 3: 48639-52533 bp Neighborhood of RT #1 [26480, 29966] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [39641, 43132] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Neighborhood of RT #3 [48639, 52948] APH PHA02517 RVT-GII GIIM InsE Feature: gene Location: 26480-26692 bp Feature: gene Location: 26840-27019 bp Feature: domain Description: PHA02517 Location: 26843-27020 bp Feature: domain Description: PHA02 517 Location: 2 6843-2 702 0 bp Feature: gene Location: 27100-28623 bp Ori: ATX50197.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27373-28105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7373-2 8105 bp Feature: domain Description: GIIM Note: maturase Location: 28180-28378 bp Feature: domain Description: GIIM Note: maturase Location: 2 8180-2 8378 bp Feature: gene Location: 28917-29288 bp Feature: gene Location: 29281-29966 bp Feature: domain Description: InsE Location: 29293-29557 bp Feature: domain Description: InsE Location: 2 92 93-2 9557 bp Feature: gene Location: 39641-40072 bp Ori: ATX50210.1 Feature: domain Description: PRK10276 Location: 39692-40055 bp Feature: domain Description: PRK102 76 Location: 39692 -40055 bp Feature: gene Location: 40230-40481 bp Feature: gene Location: 40481-41965 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40883-41573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40883-41573 bp Feature: gene Location: 42117-42814 bp Feature: domain Description: Zn_Tnp_IS1 Location: 42123-42225 bp Feature: domain Description: Zn_Tnp_IS1 Location: 42 12 3-42 2 2 5 bp Feature: domain Description: HTH_Tnp_IS1 Location: 42246-42378 bp Feature: domain Description: HTH_Tnp_IS1 Location: 42 2 46-42 378 bp Feature: gene Location: 42824-43132 bp Feature: domain Description: Rep_3 Location: 42830-43094 bp Feature: domain Description: Rep_3 Location: 42 830-43094 bp Feature: gene Location: 48639-49442 bp Ori: ATX50216.1 Feature: domain Description: APH Location: 48681-49434 bp Feature: domain Description: APH Location: 48681-49434 bp Feature: gene Location: 49549-50007 bp Feature: domain Description: PHA02517 Location: 49552-49999 bp Feature: domain Description: PHA02 517 Location: 49552 -49999 bp Feature: gene Location: 50088-51611 bp Ori: ATX50217.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50361-51093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50361-51093 bp Feature: domain Description: GIIM Note: maturase Location: 51168-51366 bp Feature: domain Description: GIIM Note: maturase Location: 51168-51366 bp Feature: gene Location: 51905-52276 bp Feature: gene Location: 52269-52948 bp Feature: domain Description: InsE Location: 52281-52533 bp Feature: domain Description: InsE Location: 52 2 81-52 533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051), APH (pfam01636)

Seq: CP024856.1 Escherichia coli strain AR_0011 plasmid tig00001011_pilon, complete sequence (181436 bp)
Overview 1 RT 1: 111785-115211 bp 2 RT 2: 126027-130029 bp Neighborhood of RT #1 [111785, 115611] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [126027, 130082] InsE RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 111785-112189 bp Ori: ATX50106.1 Feature: domain Description: InsE Location: 111815-112151 bp Feature: domain Description: InsE Location: 111815-112151 bp Feature: gene Location: 112218-112601 bp Feature: domain Description: PHA02517 Location: 112224-112557 bp Feature: domain Description: PHA02517 Location: 112224-112557 bp Feature: gene Location: 112691-114214 bp Ori: ATX50107.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112964-113696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112964-113 696 bp Feature: domain Description: GIIM Note: maturase Location: 113771-113969 bp Feature: domain Description: GIIM Note: maturase Location: 113 771-113 969 bp Feature: gene Location: 114508-114879 bp Feature: gene Location: 114872-115611 bp Feature: domain Description: InsE Location: 114875-115211 bp Feature: domain Description: InsE Location: 114875-115211 bp Feature: gene Location: 126027-126766 bp Feature: domain Description: InsE Location: 126030-126366 bp Feature: domain Description: InsE Location: 12603 0-1263 66 bp Feature: gene Location: 126759-127130 bp Feature: gene Location: 127424-128947 bp Ori: ATX50121.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127697-128429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127697-128429 bp Feature: domain Description: GIIM Note: maturase Location: 128504-128702 bp Feature: domain Description: GIIM Note: maturase Location: 128504-128702 bp Feature: gene Location: 129037-129510 bp Feature: domain Description: PHA02517 Location: 129043-129508 bp Feature: domain Description: PHA02517 Location: 129043 -129508 bp Feature: gene Location: 129513-130082 bp Ori: ATX50179.1 Feature: domain Description: autotrans_barl Location: 129594-130029 bp Feature: domain Description: autotrans_barl Location: 129594-13 0029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)