myRT

myRT report for GCA_002794415.1_ASM279441v1

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Seq: CP023345.1 Salmonella enterica subsp. diarizonae strain HZS154 chromosome, complete genome (5087369 bp)
Overview 1 RT 1: 416041-421514 bp 2 RT 2: 3226599-3231466 bp 3 RT 3: 3558312-3564051 bp Neighborhood of RT #1 [416041, 421516] HNH_2 RVT-Retrons PRK15341 PRK15340 Neighborhood of RT #2 [3226599, 3231466] LPAM_1 BamE RVT-AbiP2 PRK10328 Neighborhood of RT #3 [3558312, 3564140] PRK15471 autotrans_barl RVT-UG4 PerC CaiF_GrlA Feature: gene Location: 416041-416799 bp Ori: ATW53429.1 Feature: domain Description: HNH_2 Location: 416167-416311 bp Feature: domain Description: HNH_2 Location: 41 61 67-41 631 1 bp Feature: gene Location: 417104-417766 bp Feature: gene Location: 417756-418937 bp Ori: ATW53431.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 417906-418482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 7906-41 8482 bp Feature: gene Location: 419966-420409 bp Ori: ATW53432.1 Feature: domain Description: PRK15341 Location: 419969-420407 bp Feature: domain Description: PRK1 5341 Location: 41 9969-420407 bp Feature: gene Location: 420767-421516 bp Ori: ATW53433.1 Feature: domain Description: PRK15340 Location: 420869-421514 bp Feature: domain Description: PRK1 5340 Location: 420869-421 51 4 bp Feature: gene Location: 3226599-3227153 bp Ori: ATW55922.1 Feature: domain Description: LPAM_1 Location: 3226602-3226650 bp Feature: domain Description: LPAM_1 Location: 3226602-3226650 bp Feature: gene Location: 3227787-3228164 bp Ori: ATW55923.1 Feature: domain Description: BamE Location: 3227799-3228117 bp Feature: domain Description: BamE Location: 3227799-32281 1 7 bp Feature: gene Location: 3229105-3230646 bp Ori: ATW55924.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3229534-3229993 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3229534-3229993 bp Feature: gene Location: 3230843-3231094 bp Ori: ATW55925.1 Feature: domain Description: PRK10328 Location: 3230882-3231071 bp Feature: domain Description: PRK1 0328 Location: 3230882-3231 071 bp Feature: gene Location: 3231164-3231466 bp Feature: gene Location: 3558312-3559283 bp Ori: ATW57641.1 Feature: domain Description: PRK15471 Location: 3558318-3559278 bp Feature: domain Description: PRK1 5471 Location: 355831 8-3559278 bp Feature: gene Location: 3559362-3561983 bp Ori: ATW56201.1 Feature: domain Description: autotrans_barl Location: 3560658-3561981 bp Feature: domain Description: autotrans_barl Location: 3560658-3561 981 bp Feature: gene Location: 3562050-3562778 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3562164-3562605 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 35621 64-3562605 bp Feature: gene Location: 3563346-3563624 bp Ori: ATW56202.1 Feature: domain Description: PerC Location: 3563361-3563520 bp Feature: domain Description: PerC Location: 3563361 -3563520 bp Feature: gene Location: 3563634-3564140 bp Ori: ATW56203.1 Feature: domain Description: CaiF_GrlA Location: 3563703-3564051 bp Feature: domain Description: CaiF_GrlA Location: 3563703-3564051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_2 (pfam13391), RVT-Retrons, PRK15341 (type III secretion system invasion lipoprotein InvH), PRK15340 (AraC family transcriptional regulator InvF), LPAM_1 (pfam08139), BamE (COG2913), RVT-AbiP2, PRK10328 (DNA-binding protein StpA), PRK15471 (chain length determinant protein WzzB; Provisional), autotrans_barl (TIGR01414)
RVT-UG4, PerC (pfam06069), CaiF_GrlA (pfam07180)