myRT

myRT report for GCA_002803905.1_ASM280390v1

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Seq: CP024805.1 Escherichia coli strain AMA1167 plasmid pAMA1167-NDM-5, complete sequence (111310 bp)
Overview 1 RT 1: 75833-79477 bp Neighborhood of RT #1 [75833, 79599] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 75833-75952 bp Feature: gene Location: 76114-76271 bp Feature: gene Location: 77008-78675 bp Ori: ATX38152.1 Gene: ltrA Feature: domain Description: RVT_N Location: 77056-77293 bp Feature: domain Description: RVT_N Location: 77056-77293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77344-77986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77344-77986 bp Feature: domain Description: GIIM Note: maturase Location: 78037-78271 bp Feature: domain Description: GIIM Note: maturase Location: 78037-78271 bp Feature: domain Description: HNHc Note: nucleases Location: 78481-78640 bp Feature: domain Description: HNHc Note: nucleases Location: 78481 -78640 bp Feature: gene Location: 78989-79180 bp Feature: gene Location: 79177-79599 bp Ori: ATX38154.1 Feature: domain Description: DUF1380 Location: 79180-79477 bp Feature: domain Description: DUF1 380 Location: 791 80-79477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP024801.1 Escherichia coli strain AMA1167 chromosome, complete genome (4767526 bp)
Overview 1 RT 1: 96979-100859 bp 2 RT 2: 1826393-1833547 bp Neighborhood of RT #1 [96979, 100864] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [1826393, 1833561] GMP_PMI PRK15414 RVT_N RVT-GII GIIM HNHc TagG TagH Wzt_C-like Feature: gene Location: 96979-97695 bp Ori: ATX33632.1 Feature: domain Description: rph Location: 96982-97690 bp Feature: domain Description: rph Location: 96982 -97690 bp Feature: gene Location: 97762-98403 bp Ori: ATX33633.1 Feature: domain Description: pyrE Location: 97765-98398 bp Feature: domain Description: pyrE Location: 97765-98398 bp Feature: gene Location: 98701-99660 bp Ori: ATX33634.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 98836-99385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 98836-99385 bp Feature: gene Location: 99706-100302 bp Ori: ATX33635.1 Feature: domain Description: slmA Location: 99712-100288 bp Feature: domain Description: slmA Location: 99712 -1002 88 bp Feature: gene Location: 100409-100864 bp Ori: ATX37897.1 Feature: domain Description: dut Location: 100412-100859 bp Feature: domain Description: dut Location: 100412 -100859 bp Feature: gene Location: 1826393-1827808 bp Feature: domain Description: GMP_PMI Location: 1826399-1827803 bp Feature: domain Description: GMP_PMI Location: 182 6399-182 7803 bp Feature: gene Location: 1827832-1829148 bp Ori: ATX35206.1 Feature: domain Description: PRK15414 Location: 1827835-1829140 bp Feature: domain Description: PRK15414 Location: 182 7835-182 9140 bp Feature: gene Location: 1829722-1831389 bp Ori: ATX35207.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1829770-1830007 bp Feature: domain Description: RVT_N Location: 182 9770-1830007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1830058-1830700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1830058-1830700 bp Feature: domain Description: GIIM Note: maturase Location: 1830751-1830985 bp Feature: domain Description: GIIM Note: maturase Location: 1830751-1830985 bp Feature: domain Description: HNHc Note: nucleases Location: 1831195-1831354 bp Feature: domain Description: HNHc Note: nucleases Location: 1831195-1831354 bp Feature: gene Location: 1831553-1832347 bp Ori: ATX35208.1 Feature: domain Description: TagG Location: 1831574-1832342 bp Feature: domain Description: TagG Location: 1831574-1832 342 bp Feature: gene Location: 1832347-1833561 bp Ori: ATX35209.1 Feature: domain Description: TagH Location: 1832356-1833085 bp Feature: domain Description: TagH Location: 1832 356-1833085 bp Feature: domain Description: Wzt_C-like Location: 1833124-1833547 bp Feature: domain Description: Wzt_C-like Location: 183312 4-1833547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), GMP_PMI (TIGR01479), PRK15414 (phosphomannomutase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
HNHc (smart00507), TagG (COG1682), TagH (COG1134), Wzt_C-like (cl15685)