myRT

myRT report for GCA_002811305.2_ASM281130v2

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Seq: CP036372.1 Klebsiella pneumoniae strain WCHKP020037 plasmid pKPC2_020037, complete sequence (172770 bp)
Overview 1 RT 1: 25767-29988 bp 2 RT 2: 106653-110735 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [106653, 110872] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 25767-26189 bp Ori: QBI89460.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1 380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: QBI89462.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 281 64-28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Feature: gene Location: 106653-107084 bp Ori: QBI89541.1 Gene: umuD Feature: domain Description: PRK10276 Location: 106704-107067 bp Feature: domain Description: PRK1 0276 Location: 1 06704-1 07067 bp Feature: gene Location: 107243-107494 bp Feature: gene Location: 107494-108978 bp Ori: QBI89543.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107896-108586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07896-1 08586 bp Feature: gene Location: 109227-110198 bp Ori: QBI89544.1 Feature: domain Description: StbA Location: 109230-110175 bp Feature: domain Description: StbA Location: 1 09230-1 1 01 75 bp Feature: gene Location: 110201-110872 bp Ori: QBI89545.1 Feature: domain Description: Plasmid_stab_B Location: 110216-110423 bp Feature: domain Description: Plasmid_stab_B Location: 1 1 021 6-1 1 0423 bp Feature: domain Description: Plasmid_stab_B Location: 110528-110735 bp Feature: domain Description: Plasmid_stab_B Location: 1 1 0528-1 1 0735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP036371.1 Klebsiella pneumoniae strain WCHKP020037 chromosome, complete genome (5480603 bp)
Overview 1 RT 1: 1355002-1359864 bp 2 RT 2: 1716066-1720366 bp 3 RT 3: 1789088-1793196 bp 4 RT 4: 1940948-1945084 bp 5 RT 5: 3174529-3178761 bp 6 RT 6: 3195018-3199899 bp 7 RT 7: 3657490-3660266 bp 8 RT 8: 3819418-3823454 bp Neighborhood of RT #1 [1355002, 1359890] int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1716066, 1720366] PRK05318 RVT-GII PRK10597 Neighborhood of RT #3 [1789088, 1793198] DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1940948, 1945086] RVT-GII PRK10276 umuC Neighborhood of RT #5 [3174529, 3179291] IS5 RVT-Retrons STKc_PknB_like Neighborhood of RT #6 [3195018, 3199904] YccC PRK10016 RVT-GII dacD Neighborhood of RT #7 [3657490, 3660266] RVT-GII Neighborhood of RT #8 [3819418, 3824308] DinI RVT-GII Phage_GPA Feature: gene Location: 1355002-1356054 bp Ori: QBI85377.1 Feature: domain Description: int Location: 1355005-1356004 bp Feature: domain Description: int Location: 1355005-1356004 bp Feature: gene Location: 1356222-1356473 bp Feature: gene Location: 1356473-1357957 bp Ori: QBI85379.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356875-1357565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356875-1357565 bp Feature: gene Location: 1358056-1359000 bp Feature: gene Location: 1359012-1359890 bp Ori: QBI89239.1 Feature: domain Description: Phage_CI_repr Location: 1359039-1359222 bp Feature: domain Description: Phage_CI_repr Location: 1359039-13592 2 2 bp Feature: domain Description: Phage_CI_repr Location: 1359351-1359543 bp Feature: domain Description: Phage_CI_repr Location: 1359351-1359543 bp Feature: domain Description: Phage_CI_C Location: 1359570-1359864 bp Feature: domain Description: Phage_CI_C Location: 1359570-1359864 bp Feature: gene Location: 1716066-1717427 bp Ori: QBI85713.1 Feature: domain Description: PRK05318 Location: 1716090-1717389 bp Feature: domain Description: PRK05318 Location: 1716090-1717389 bp Feature: gene Location: 1718017-1718268 bp Feature: gene Location: 1718268-1719752 bp Ori: QBI85715.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718670-1719360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718670-1719360 bp Feature: gene Location: 1719831-1720064 bp Ori: QBI85716.1 Feature: domain Description: PRK10597 Location: 1719834-1720059 bp Feature: domain Description: PRK10597 Location: 1719834-172 0059 bp Feature: gene Location: 1720076-1720366 bp Feature: gene Location: 1789088-1789330 bp Ori: QBI85787.1 Feature: domain Description: DinI Location: 1789139-1789319 bp Feature: domain Description: DinI Location: 1789139-1789319 bp Feature: gene Location: 1789697-1789948 bp Feature: gene Location: 1789948-1791432 bp Ori: QBI85789.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790350-1791040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790350-1791040 bp Feature: gene Location: 1791511-1791930 bp Ori: QBI85790.1 Gene: umuD Feature: domain Description: PRK10276 Location: 1791514-1791925 bp Feature: domain Description: PRK102 76 Location: 1791514-179192 5 bp Feature: gene Location: 1791933-1793198 bp Ori: QBI85791.1 Gene: umuC Feature: domain Description: umuC Location: 1791936-1793196 bp Feature: domain Description: umuC Location: 1791936-1793196 bp Feature: gene Location: 1940948-1941037 bp Feature: gene Location: 1941585-1941836 bp Feature: gene Location: 1941836-1943320 bp Ori: QBI85938.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942238-1942928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942 2 38-1942 92 8 bp Feature: gene Location: 1943400-1943819 bp Ori: QBI85939.1 Gene: umuD Feature: domain Description: PRK10276 Location: 1943403-1943814 bp Feature: domain Description: PRK102 76 Location: 1943403-1943814 bp Feature: gene Location: 1943821-1945086 bp Ori: QBI85940.1 Gene: umuC Feature: domain Description: umuC Location: 1943824-1945084 bp Feature: domain Description: umuC Location: 194382 4-1945084 bp Feature: gene Location: 3174529-3175509 bp Ori: QBI87081.1 Feature: domain Description: IS5 Location: 3174718-3175495 bp Feature: domain Description: IS5 Location: 3174718-3175495 bp Feature: gene Location: 3175575-3176414 bp Feature: gene Location: 3176529-3177629 bp Ori: QBI87082.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3176712-3177240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3176712 -31772 40 bp Feature: gene Location: 3177876-3178118 bp Feature: gene Location: 3178188-3179291 bp Ori: QBI87083.1 Feature: domain Description: STKc_PknB_like Location: 3178320-3178761 bp Feature: domain Description: STKc_PknB_like Location: 317832 0-3178761 bp Feature: gene Location: 3195018-3196076 bp Ori: QBI87102.1 Feature: domain Description: YccC Location: 3195024-3196062 bp Feature: domain Description: YccC Location: 319502 4-3196062 bp Feature: gene Location: 3196175-3196648 bp Ori: QBI87103.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 3196178-3196637 bp Feature: domain Description: PRK10016 Location: 3196178-3196637 bp Feature: gene Location: 3196730-3198214 bp Ori: QBI87104.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3197132-3197822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3197132 -319782 2 bp Feature: gene Location: 3198214-3198465 bp Feature: gene Location: 3198735-3199904 bp Ori: QBI87106.1 Gene: dacD Feature: domain Description: dacD Location: 3198744-3199899 bp Feature: domain Description: dacD Location: 3198744-3199899 bp Feature: gene Location: 3657490-3657747 bp Feature: gene Location: 3657900-3658151 bp Feature: gene Location: 3658151-3659635 bp Ori: QBI87496.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3658553-3659243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3658553-36592 43 bp Feature: gene Location: 3659732-3660070 bp Feature: gene Location: 3660063-3660266 bp Feature: gene Location: 3819418-3819651 bp Ori: QBI87654.1 Feature: domain Description: DinI Location: 3819463-3819646 bp Feature: domain Description: DinI Location: 3819463-3819646 bp Feature: gene Location: 3819663-3819851 bp Feature: gene Location: 3819959-3821443 bp Ori: QBI87656.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3820361-3821051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 0361-382 1051 bp Feature: gene Location: 3821443-3821694 bp Feature: gene Location: 3821924-3824308 bp Ori: QBI87658.1 Feature: domain Description: Phage_GPA Location: 3822488-3823454 bp Feature: domain Description: Phage_GPA Location: 382 2 488-382 3454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), IS5 (COG3039)
RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), Phage_GPA (pfam05840)