myRT

myRT report for GCA_002811325.2_ASM281132v2

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Seq: CP028583.1 Klebsiella pneumoniae strain WCHKP36 chromosome, complete genome (5444817 bp)
Overview 1 RT 1: 1243818-1248798 bp 2 RT 2: 1407950-1410636 bp 3 RT 3: 1868228-1873100 bp 4 RT 4: 1889618-1895880 bp 5 RT 5: 3133234-3137372 bp 6 RT 6: 3285626-3289725 bp 7 RT 7: 3358458-3362720 bp 8 RT 8: 3683209-3688047 bp Neighborhood of RT #1 [1243818, 1248798] Phage_GPA RVT-GII Neighborhood of RT #2 [1407950, 1410636] DinI RVT-GII Neighborhood of RT #3 [1868228, 1873114] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1889618, 1895880] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3133234, 3137372] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3285626, 3289736] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3358458, 3362758] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3683209, 3688097] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1243818-1246202 bp Ori: AWA10330.1 Feature: domain Description: Phage_GPA Location: 1244382-1245348 bp Feature: domain Description: Phage_GPA Location: 1 244382-1 245348 bp Feature: gene Location: 1246432-1246683 bp Feature: gene Location: 1246683-1248167 bp Ori: AWA10332.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1247085-1247775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 247085-1 247775 bp Feature: gene Location: 1248264-1248602 bp Feature: gene Location: 1248595-1248798 bp Feature: gene Location: 1407950-1408183 bp Ori: AWA10490.1 Feature: domain Description: DinI Location: 1407995-1408178 bp Feature: domain Description: DinI Location: 1 407995-1 4081 78 bp Feature: gene Location: 1408195-1408383 bp Feature: gene Location: 1408491-1409975 bp Ori: AWA10492.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1408893-1409583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 408893-1 409583 bp Feature: gene Location: 1409975-1410226 bp Feature: gene Location: 1410379-1410636 bp Feature: gene Location: 1868228-1869397 bp Ori: AWA10876.1 Feature: domain Description: dacD Location: 1868237-1869392 bp Feature: domain Description: dacD Location: 1 868237-1 869392 bp Feature: gene Location: 1869667-1869918 bp Feature: gene Location: 1869918-1871402 bp Ori: AWA10878.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870320-1871010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 870320-1 871 01 0 bp Feature: gene Location: 1871484-1871957 bp Ori: AWA10879.1 Feature: domain Description: PRK10016 Location: 1871487-1871946 bp Feature: domain Description: PRK1 001 6 Location: 1 871 487-1 871 946 bp Feature: gene Location: 1872056-1873114 bp Ori: AWA10880.1 Feature: domain Description: YccC Location: 1872062-1873100 bp Feature: domain Description: YccC Location: 1 872062-1 8731 00 bp Feature: gene Location: 1889618-1890721 bp Ori: AWA10898.1 Feature: domain Description: STKc_PknB_like Location: 1889750-1890191 bp Feature: domain Description: STKc_PknB_like Location: 1 889750-1 8901 91 bp Feature: gene Location: 1890791-1891033 bp Feature: gene Location: 1891280-1892380 bp Ori: AWA10899.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1891463-1891991 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 891 463-1 891 991 bp Feature: gene Location: 1892495-1894771 bp Ori: AWA10900.1 Feature: domain Description: AAA_15 Location: 1892528-1893536 bp Feature: domain Description: AAA_1 5 Location: 1 892528-1 893536 bp Feature: gene Location: 1895650-1895880 bp Feature: gene Location: 3133234-3134499 bp Ori: AWA12066.1 Feature: domain Description: umuC Location: 3133237-3134497 bp Feature: domain Description: umuC Location: 31 33237-31 34497 bp Feature: gene Location: 3134501-3134920 bp Ori: AWA12067.1 Feature: domain Description: PRK10276 Location: 3134504-3134915 bp Feature: domain Description: PRK1 0276 Location: 31 34504-31 3491 5 bp Feature: gene Location: 3135000-3136484 bp Ori: AWA12068.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135402-3136092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 35402-31 36092 bp Feature: gene Location: 3136484-3136735 bp Feature: gene Location: 3137283-3137372 bp Feature: gene Location: 3285626-3286891 bp Ori: AWA12216.1 Feature: domain Description: umuC Location: 3285629-3286889 bp Feature: domain Description: umuC Location: 3285629-3286889 bp Feature: gene Location: 3286894-3287313 bp Ori: AWA12217.1 Feature: domain Description: PRK10276 Location: 3286897-3287308 bp Feature: domain Description: PRK1 0276 Location: 3286897-3287308 bp Feature: gene Location: 3287392-3288876 bp Ori: AWA12218.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3287794-3288484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3287794-3288484 bp Feature: gene Location: 3288876-3289127 bp Feature: gene Location: 3289494-3289736 bp Ori: AWA12220.1 Feature: domain Description: DinI Location: 3289545-3289725 bp Feature: domain Description: DinI Location: 3289545-3289725 bp Feature: gene Location: 3358458-3358748 bp Feature: gene Location: 3358760-3358993 bp Ori: AWA12292.1 Feature: domain Description: PRK10597 Location: 3358763-3358988 bp Feature: domain Description: PRK1 0597 Location: 3358763-3358988 bp Feature: gene Location: 3359072-3360556 bp Ori: AWA12293.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3359474-3360164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3359474-33601 64 bp Feature: gene Location: 3360556-3360807 bp Feature: gene Location: 3361397-3362758 bp Ori: AWA12295.1 Feature: domain Description: PRK05318 Location: 3361421-3362720 bp Feature: domain Description: PRK0531 8 Location: 3361 421 -3362720 bp Feature: gene Location: 3683209-3684087 bp Ori: AWA12590.1 Feature: domain Description: Phage_CI_repr Location: 3683236-3683419 bp Feature: domain Description: Phage_CI_repr Location: 3683236-368341 9 bp Feature: domain Description: Phage_CI_repr Location: 3683548-3683740 bp Feature: domain Description: Phage_CI_repr Location: 3683548-3683740 bp Feature: domain Description: Phage_CI_C Location: 3683767-3684061 bp Feature: domain Description: Phage_CI_C Location: 3683767-3684061 bp Feature: gene Location: 3684099-3685043 bp Feature: gene Location: 3685142-3686626 bp Ori: AWA12592.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3685544-3686234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3685544-3686234 bp Feature: gene Location: 3686626-3686877 bp Feature: gene Location: 3687045-3688097 bp Ori: AWA12594.1 Feature: domain Description: int Location: 3687048-3688047 bp Feature: domain Description: int Location: 3687048-3688047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP028582.1 Klebsiella pneumoniae strain WCHKP36 plasmid pKPC2_020036, complete sequence (149258 bp)
Overview 1 RT 1: 119365-123567 bp Neighborhood of RT #1 [119365, 123584] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 119365-120036 bp Ori: AWA09090.1 Feature: domain Description: Plasmid_stab_B Location: 119380-119587 bp Feature: domain Description: Plasmid_stab_B Location: 119380-119587 bp Feature: domain Description: Plasmid_stab_B Location: 119692-119899 bp Feature: domain Description: Plasmid_stab_B Location: 119692 -119899 bp Feature: gene Location: 120039-121010 bp Ori: AWA09091.1 Feature: domain Description: StbA Location: 120042-120987 bp Feature: domain Description: StbA Location: 12 0042 -12 0987 bp Feature: gene Location: 121259-122743 bp Ori: AWA09092.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121661-122351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 1661-12 2 351 bp Feature: gene Location: 122743-122994 bp Feature: gene Location: 123153-123584 bp Ori: AWA09094.1 Feature: domain Description: PRK10276 Location: 123204-123567 bp Feature: domain Description: PRK102 76 Location: 12 32 04-12 3567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP028580.1 Klebsiella pneumoniae strain WCHKP36 plasmid p2_020036, complete sequence (12746 bp)
Overview 1 RT 1: 99-3408 bp Neighborhood of RT #1 [99, 3841] RVT-GII Cloacin E2R135 Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 99-350 bp Feature: gene Location: 350-1834 bp Ori: AWA08937.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: gene Location: 1939-3087 bp Feature: domain Description: Cloacin Location: 2071-2896 bp Feature: domain Description: Cloacin Location: 2071-2896 bp Feature: domain Description: E2R135 Location: 2905-3088 bp Feature: domain Description: E2R13 5 Location: 2905-3 088 bp Feature: gene Location: 3144-3841 bp Feature: domain Description: Zn_Tnp_IS1 Location: 3150-3252 bp Feature: domain Description: Zn_Tnp_IS1 Location: 3 150-3 252 bp Feature: domain Description: HTH_Tnp_IS1 Location: 3273-3408 bp Feature: domain Description: HTH_Tnp_IS1 Location: 3 273 -3 408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)