myRT

myRT report for GCA_002812405.1_ASM281240v1

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Seq: CP025018.1 Streptomyces sp. M56 (11742376 bp)
Overview 1 RT 1: 22831-26838 bp 2 RT 2: 7725251-7730479 bp 3 RT 3: 11670317-11674755 bp 4 RT 4: 11726225-11730617 bp Neighborhood of RT #1 [22831, 26900] HTH_Tnp_4 DDE_Tnp_4 InsE RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 AcrR Neighborhood of RT #2 [7725251, 7730490] InsQ RVT_N RVT-GII GIIM HNH MhpC Neighborhood of RT #3 [11670317, 11674886] DUF4096 COG3293 RimI RVT-GII GIIM DDE_3 Neighborhood of RT #4 [11726225, 11730982] SnoaL_4 DUF4157 RVT-GII KOG3010 Feature: gene Location: 22831-23532 bp Ori: AUA07928.1 Feature: domain Description: HTH_Tnp_4 Location: 22924-23059 bp Feature: domain Description: HTH_Tnp_4 Location: 22924-23059 bp Feature: domain Description: DDE_Tnp_4 Location: 23128-23512 bp Feature: domain Description: DDE_Tnp_4 Location: 231 28-2351 2 bp Feature: gene Location: 23571-23870 bp Ori: AUA07929.1 Feature: domain Description: InsE Location: 23598-23817 bp Feature: domain Description: InsE Location: 23598-2381 7 bp Feature: gene Location: 24302-24652 bp Ori: AUA07930.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24539-24638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24539-24638 bp Feature: gene Location: 24796-26115 bp Ori: AUA07931.1 Feature: domain Description: zf-ISL3 Location: 24919-25048 bp Feature: domain Description: zf-ISL3 Location: 2491 9-25048 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 25078-25225 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 25078-25225 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 25276-26065 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 25276-26065 bp Feature: gene Location: 26310-26900 bp Ori: AUA07932.1 Feature: domain Description: AcrR Location: 26319-26838 bp Feature: domain Description: AcrR Location: 2631 9-26838 bp Feature: gene Location: 7725251-7725502 bp Feature: gene Location: 7725563-7726219 bp Ori: AUA14144.1 Feature: domain Description: InsQ Location: 7725581-7726160 bp Feature: domain Description: InsQ Location: 7725581 -77261 60 bp Feature: gene Location: 7726304-7728091 bp Ori: AUA14145.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 7726373-7726616 bp Feature: domain Description: RVT_N Location: 7726373-772661 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7726667-7727324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7726667-7727324 bp Feature: domain Description: GIIM Note: maturase Location: 7727384-7727612 bp Feature: domain Description: GIIM Note: maturase Location: 7727384-772761 2 bp Feature: domain Description: HNH Note: nucleases Location: 7727939-7728038 bp Feature: domain Description: HNH Note: nucleases Location: 7727939-7728038 bp Feature: gene Location: 7728653-7729276 bp Feature: gene Location: 7729708-7730490 bp Ori: AUA14147.1 Gene: dehH1_3 Feature: domain Description: MhpC Location: 7729729-7730479 bp Feature: domain Description: MhpC Location: 7729729-7730479 bp Feature: gene Location: 11670317-11671192 bp Ori: AUA17231.1 Feature: domain Description: DUF4096 Location: 11670335-11670551 bp Feature: domain Description: DUF4096 Location: 1 1 670335-1 1 670551 bp Feature: domain Description: COG3293 Location: 11670749-11671178 bp Feature: domain Description: COG3293 Location: 1 1 670749-1 1 671 1 78 bp Feature: gene Location: 11671234-11672061 bp Ori: AUA17232.1 Feature: domain Description: RimI Location: 11671744-11672056 bp Feature: domain Description: RimI Location: 1 1 671 744-1 1 672056 bp Feature: gene Location: 11672104-11672958 bp Ori: AUA17233.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11672134-11672236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6721 34-1 1 672236 bp Feature: domain Description: GIIM Note: maturase Location: 11672290-11672521 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 672290-1 1 672521 bp Feature: gene Location: 11673163-11673333 bp Feature: gene Location: 11674455-11674886 bp Ori: AUA17235.1 Feature: domain Description: DDE_3 Location: 11674530-11674755 bp Feature: domain Description: DDE_3 Location: 1 1 674530-1 1 674755 bp Feature: gene Location: 11726225-11726743 bp Ori: AUA17295.1 Feature: domain Description: SnoaL_4 Location: 11726246-11726666 bp Feature: domain Description: SnoaL_4 Location: 1 1 726246-1 1 726666 bp Feature: gene Location: 11727866-11728246 bp Ori: AUA17296.1 Feature: domain Description: DUF4157 Location: 11727914-11728106 bp Feature: domain Description: DUF41 57 Location: 1 1 72791 4-1 1 7281 06 bp Feature: gene Location: 11728825-11729286 bp Ori: AUA17297.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11729098-11729206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 729098-1 1 729206 bp Feature: gene Location: 11729808-11730116 bp Feature: gene Location: 11730191-11730982 bp Ori: AUA17299.1 Feature: domain Description: KOG3010 Location: 11730218-11730617 bp Feature: domain Description: KOG301 0 Location: 1 1 73021 8-1 1 73061 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), InsE (COG2963), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), AcrR (COG1309), InsQ (COG0675), RVT_N (pfam13655)
GIIM (pfam08388), HNH (pfam01844), MhpC (COG0596), DUF4096 (pfam13340), COG3293 (Transposase ), RimI (COG0456), DDE_3 (pfam13358), SnoaL_4 (pfam13577), DUF4157 (pfam13699), KOG3010 (KOG3010, Methyltransferase )