myRT

myRT report for GCA_002812625.1_ASM281262v1

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Seq: CP025046.1 Clostridioides difficile strain W0022a chromosome (4188456 bp)
Overview 1 RT 1: 1945339-1950228 bp 2 RT 2: 2314256-2319142 bp 3 RT 3: 2325640-2330131 bp 4 RT 4: 2879829-2884331 bp 5 RT 5: 3755866-3760360 bp Neighborhood of RT #1 [1945339, 1950281] Lysozyme_like Spr RVT-GII Intron_maturas2 HNHc TpcC Hydrolase_4 Neighborhood of RT #2 [2314256, 2319186] Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc PldB Hydrolase_4 Neighborhood of RT #3 [2325640, 2330139] Lysozyme_like Spr RVT-GII Intron_maturas2 HNHc TpcC Neighborhood of RT #4 [2879829, 2884333] TpcC RVT-GII Intron_maturas2 HNHc Lysozyme_like Spr Neighborhood of RT #5 [3755866, 3760362] TpcC RVT-GII Intron_maturas2 HNHc Lysozyme_like Spr Feature: gene Location: 1945339-1946004 bp Feature: domain Description: Lysozyme_like Location: 1945342-1945714 bp Feature: domain Description: Lysozyme_like Location: 1 945342-1 94571 4 bp Feature: domain Description: Spr Location: 1945747-1946002 bp Feature: domain Description: Spr Location: 1 945747-1 946002 bp Feature: gene Location: 1946198-1946423 bp Feature: gene Location: 1946658-1948454 bp Ori: AUA21901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1946925-1947735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 946925-1 947735 bp Feature: domain Description: Intron_maturas2 Location: 1947801-1948140 bp Feature: domain Description: Intron_maturas2 Location: 1 947801 -1 9481 40 bp Feature: domain Description: HNHc Note: nucleases Location: 1948272-1948428 bp Feature: domain Description: HNHc Note: nucleases Location: 1 948272-1 948428 bp Feature: gene Location: 1948600-1949211 bp Feature: domain Description: TpcC Location: 1948606-1949203 bp Feature: domain Description: TpcC Location: 1 948606-1 949203 bp Feature: gene Location: 1949424-1950281 bp Ori: AUA21902.1 Feature: domain Description: Hydrolase_4 Location: 1949502-1950228 bp Feature: domain Description: Hydrolase_4 Location: 1 949502-1 950228 bp Feature: gene Location: 2314256-2315377 bp Ori: AUA22227.1 Feature: domain Description: Rol_Rep_N Location: 2314385-2314646 bp Feature: domain Description: Rol_Rep_N Location: 231 4385-231 4646 bp Feature: domain Description: Rep_trans Location: 2314670-2315285 bp Feature: domain Description: Rep_trans Location: 231 4670-231 5285 bp Feature: gene Location: 2315385-2315519 bp Ori: AUA22228.1 Feature: domain Description: DUF3789 Location: 2315397-2315490 bp Feature: domain Description: DUF3789 Location: 231 5397-231 5490 bp Feature: gene Location: 2316261-2318171 bp Ori: AUA22229.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2316594-2317332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 6594-231 7332 bp Feature: domain Description: HNHc Note: nucleases Location: 2317887-2318052 bp Feature: domain Description: HNHc Note: nucleases Location: 231 7887-231 8052 bp Feature: gene Location: 2318338-2318499 bp Feature: gene Location: 2318584-2319186 bp Ori: AUA22231.1 Feature: domain Description: PldB Location: 2318752-2318869 bp Feature: domain Description: PldB Location: 231 8752-231 8869 bp Feature: domain Description: Hydrolase_4 Location: 2318869-2319142 bp Feature: domain Description: Hydrolase_4 Location: 231 8869-231 91 42 bp Feature: gene Location: 2325640-2326539 bp Feature: domain Description: Lysozyme_like Location: 2325787-2326249 bp Feature: domain Description: Lysozyme_like Location: 2325787-2326249 bp Feature: domain Description: Spr Location: 2326282-2326537 bp Feature: domain Description: Spr Location: 2326282-2326537 bp Feature: gene Location: 2326733-2326958 bp Feature: gene Location: 2327193-2328989 bp Ori: AUA22238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327460-2328270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327460-2328270 bp Feature: domain Description: Intron_maturas2 Location: 2328336-2328675 bp Feature: domain Description: Intron_maturas2 Location: 2328336-2328675 bp Feature: domain Description: HNHc Note: nucleases Location: 2328807-2328963 bp Feature: domain Description: HNHc Note: nucleases Location: 2328807-2328963 bp Feature: gene Location: 2329017-2329214 bp Feature: gene Location: 2329234-2330139 bp Ori: AUA22240.1 Feature: domain Description: TpcC Location: 2329459-2330131 bp Feature: domain Description: TpcC Location: 2329459-23301 31 bp Feature: gene Location: 2879829-2880740 bp Ori: AUA22728.1 Feature: domain Description: TpcC Location: 2880063-2880732 bp Feature: domain Description: TpcC Location: 2880063-2880732 bp Feature: gene Location: 2880756-2880956 bp Feature: gene Location: 2880984-2882780 bp Ori: AUA22730.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881251-2882061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881 251 -2882061 bp Feature: domain Description: Intron_maturas2 Location: 2882127-2882466 bp Feature: domain Description: Intron_maturas2 Location: 28821 27-2882466 bp Feature: domain Description: HNHc Note: nucleases Location: 2882598-2882754 bp Feature: domain Description: HNHc Note: nucleases Location: 2882598-2882754 bp Feature: gene Location: 2883015-2883240 bp Feature: gene Location: 2883434-2884333 bp Feature: domain Description: Lysozyme_like Location: 2883581-2884043 bp Feature: domain Description: Lysozyme_like Location: 2883581 -2884043 bp Feature: domain Description: Spr Location: 2884064-2884331 bp Feature: domain Description: Spr Location: 2884064-2884331 bp Feature: gene Location: 3755866-3756768 bp Ori: AUA23453.1 Feature: domain Description: TpcC Location: 3756091-3756760 bp Feature: domain Description: TpcC Location: 3756091 -3756760 bp Feature: gene Location: 3756785-3756985 bp Feature: gene Location: 3757013-3758809 bp Ori: AUA23455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3757280-3758090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3757280-3758090 bp Feature: domain Description: Intron_maturas2 Location: 3758156-3758495 bp Feature: domain Description: Intron_maturas2 Location: 37581 56-3758495 bp Feature: domain Description: HNHc Note: nucleases Location: 3758627-3758783 bp Feature: domain Description: HNHc Note: nucleases Location: 3758627-3758783 bp Feature: gene Location: 3759044-3759269 bp Feature: gene Location: 3759463-3760362 bp Feature: domain Description: Lysozyme_like Location: 3759610-3760072 bp Feature: domain Description: Lysozyme_like Location: 375961 0-3760072 bp Feature: domain Description: Spr Location: 3760105-3760360 bp Feature: domain Description: Spr Location: 37601 05-3760360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TpcC (pfam12642), Hydrolase_4 (pfam12146), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664)
PldB (COG2267)