myRT

myRT report for GCA_002813575.1_ASM281357v1

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Seq: CP024793.1 Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence (805120 bp)
Overview 1 RT 1: 504784-509195 bp 2 RT 2: 699458-703655 bp Neighborhood of RT #1 [504784, 509195] RVT-GII COG5421 Neighborhood of RT #2 [699458, 703720] TIGR02436 RVT-GII McrA DUF5372 PinE Zn_ribbon_recom HTH_17 Feature: gene Location: 504784-505113 bp Feature: gene Location: 505364-505735 bp Feature: gene Location: 505875-506693 bp Ori: AUB44682.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505995-506634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505995-506634 bp Feature: gene Location: 507102-508844 bp Ori: AUB44683.1 Feature: domain Description: COG5421 Location: 507141-508764 bp Feature: domain Description: COG5421 Location: 5071 41 -508764 bp Feature: gene Location: 508860-509195 bp Feature: gene Location: 699458-699721 bp Ori: AUB44913.1 Feature: domain Description: TIGR02436 Location: 699482-699701 bp Feature: domain Description: TIGR02436 Location: 699482-699701 bp Feature: gene Location: 699750-699923 bp Feature: gene Location: 699977-701095 bp Ori: AUB44915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699989-700511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699989-70051 1 bp Feature: domain Description: McrA Location: 700742-701072 bp Feature: domain Description: McrA Location: 700742-701 072 bp Feature: gene Location: 701106-701630 bp Ori: AUB44916.1 Feature: domain Description: DUF5372 Location: 701211-701418 bp Feature: domain Description: DUF5372 Location: 701 21 1 -701 41 8 bp Feature: gene Location: 701642-703720 bp Ori: AUB44917.1 Feature: domain Description: PinE Location: 701681-702314 bp Feature: domain Description: PinE Location: 701 681 -70231 4 bp Feature: domain Description: Zn_ribbon_recom Location: 702638-702815 bp Feature: domain Description: Zn_ribbon_recom Location: 702638-70281 5 bp Feature: domain Description: HTH_17 Location: 703535-703655 bp Feature: domain Description: HTH_1 7 Location: 703535-703655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG5421 (Transposase ), TIGR02436 (four helix bundle protein), McrA (COG4058), DUF5372 (pfam17342), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)

Seq: CP024785.1 Nostoc flagelliforme CCNUN1 chromosome, complete genome (8363872 bp)
Overview 1 RT 1: 91934-94249 bp 2 RT 2: 1072797-1075715 bp 3 RT 3: 1302491-1307085 bp 4 RT 4: 1317760-1322895 bp 5 RT 5: 2385518-2390599 bp 6 RT 6: 2395088-2397869 bp 7 RT 7: 3167400-3172194 bp 8 RT 8: 7815808-7819107 bp 9 RT 9: 8195841-8201683 bp Neighborhood of RT #1 [91934, 94249] RVT-GII Neighborhood of RT #2 [1072797, 1075729] RVT-GII GIIM McrA HTH_23 INT_FimBE_like Neighborhood of RT #3 [1302491, 1307138] RVT-GII GIIM HNHc HTH_Tnp_4 DDE_Tnp_4 Neighborhood of RT #4 [1317760, 1322895] PinE Zn_ribbon_recom HTH_17 DUF5372 RVT-GII McrA Neighborhood of RT #5 [2385518, 2390599] INTN1_C_like Int_alpha Int_alpha Int_alpha Int_alpha Int_alpha Int_alpha Int_alpha HemolysinCabind COG2931 RVT-GII Neighborhood of RT #6 [2395088, 2397869] RVT-GII Neighborhood of RT #7 [3167400, 3172259] RVT-GII GIIM McrA DUF5372 PinE Zn_ribbon_recom HTH_17 Neighborhood of RT #8 [7815808, 7819107] YfmG Avd_like RVT-DGRs Neighborhood of RT #9 [8195841, 8201700] RVT_N RVT-GII group_II_RT_mat HNH MrcB FolK Feature: gene Location: 91934-92077 bp Ori: AUB34285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91937-92024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91937-92 02 4 bp Feature: gene Location: 92097-92228 bp Feature: gene Location: 94118-94249 bp Feature: gene Location: 1072797-1073345 bp Feature: gene Location: 1073370-1073996 bp Feature: gene Location: 1074121-1075005 bp Ori: AUB35297.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074196-1074418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074196-1074418 bp Feature: domain Description: GIIM Note: maturase Location: 1074475-1074631 bp Feature: domain Description: GIIM Note: maturase Location: 1074475-1074631 bp Feature: domain Description: McrA Location: 1074649-1074976 bp Feature: domain Description: McrA Location: 1074649-1074976 bp Feature: gene Location: 1075282-1075500 bp Ori: AUB35298.1 Feature: domain Description: HTH_23 Location: 1075360-1075477 bp Feature: domain Description: HTH_2 3 Location: 1075360-1075477 bp Feature: gene Location: 1075580-1075729 bp Ori: AUB35299.1 Feature: domain Description: INT_FimBE_like Location: 1075583-1075715 bp Feature: domain Description: INT_FimBE_like Location: 1075583-1075715 bp Feature: gene Location: 1302491-1302676 bp Feature: gene Location: 1302844-1303728 bp Feature: gene Location: 1303750-1304814 bp Ori: AUB35502.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303756-1304089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303756-1304089 bp Feature: domain Description: GIIM Note: maturase Location: 1304161-1304395 bp Feature: domain Description: GIIM Note: maturase Location: 1304161-1304395 bp Feature: domain Description: HNHc Note: nucleases Location: 1304596-1304758 bp Feature: domain Description: HNHc Note: nucleases Location: 1304596-1304758 bp Feature: gene Location: 1304982-1305827 bp Feature: gene Location: 1306221-1307138 bp Ori: AUB35504.1 Feature: domain Description: HTH_Tnp_4 Location: 1306404-1306554 bp Feature: domain Description: HTH_Tnp_4 Location: 1306404-1306554 bp Feature: domain Description: DDE_Tnp_4 Location: 1306638-1307085 bp Feature: domain Description: DDE_Tnp_4 Location: 1306638-1307085 bp Feature: gene Location: 1317760-1319838 bp Ori: AUB35529.1 Feature: domain Description: PinE Location: 1317799-1318432 bp Feature: domain Description: PinE Location: 1317799-1318432 bp Feature: domain Description: Zn_ribbon_recom Location: 1318756-1318933 bp Feature: domain Description: Zn_ribbon_recom Location: 1318756-1318933 bp Feature: domain Description: HTH_17 Location: 1319653-1319773 bp Feature: domain Description: HTH_17 Location: 1319653-1319773 bp Feature: gene Location: 1319850-1320374 bp Ori: AUB35530.1 Feature: domain Description: DUF5372 Location: 1319955-1320162 bp Feature: domain Description: DUF5372 Location: 1319955-132 0162 bp Feature: gene Location: 1320355-1321542 bp Ori: AUB35531.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1320397-1320958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 0397-132 0958 bp Feature: domain Description: McrA Location: 1321189-1321531 bp Feature: domain Description: McrA Location: 132 1189-132 1531 bp Feature: gene Location: 1321631-1322152 bp Feature: gene Location: 1322479-1322895 bp Feature: gene Location: 2385518-2386099 bp Ori: AUB36634.1 Feature: domain Description: INTN1_C_like Location: 2385599-2386070 bp Feature: domain Description: INTN1_C_like Location: 2 385599-2 386070 bp Feature: gene Location: 2386572-2389148 bp Ori: AUB36635.1 Feature: domain Description: Int_alpha Location: 2386668-2386806 bp Feature: domain Description: Int_alpha Location: 2 386668-2 386806 bp Feature: domain Description: Int_alpha Location: 2386893-2387019 bp Feature: domain Description: Int_alpha Location: 2 386893-2 387019 bp Feature: domain Description: Int_alpha Location: 2387103-2387241 bp Feature: domain Description: Int_alpha Location: 2 387103-2 3872 41 bp Feature: domain Description: Int_alpha Location: 2387322-2387457 bp Feature: domain Description: Int_alpha Location: 2 38732 2 -2 387457 bp Feature: domain Description: Int_alpha Location: 2387529-2387676 bp Feature: domain Description: Int_alpha Location: 2 38752 9-2 387676 bp Feature: domain Description: Int_alpha Location: 2387757-2387895 bp Feature: domain Description: Int_alpha Location: 2 387757-2 387895 bp Feature: domain Description: Int_alpha Location: 2387976-2388114 bp Feature: domain Description: Int_alpha Location: 2 387976-2 388114 bp Feature: domain Description: HemolysinCabind Location: 2388135-2388231 bp Feature: domain Description: HemolysinCabind Location: 2 388135-2 3882 31 bp Feature: domain Description: COG2931 Location: 2388546-2389134 bp Feature: domain Description: COG2 931 Location: 2 388546-2 389134 bp Feature: gene Location: 2389483-2389968 bp Ori: AUB36636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2389495-2389816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 389495-2 389816 bp Feature: gene Location: 2389940-2390308 bp Feature: gene Location: 2390366-2390599 bp Feature: gene Location: 2395088-2395321 bp Feature: gene Location: 2395379-2395747 bp Feature: gene Location: 2395719-2396204 bp Ori: AUB36645.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395731-2396052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 395731-2 396052 bp Feature: gene Location: 2396539-2396712 bp Feature: gene Location: 2397165-2397869 bp Feature: gene Location: 3167400-3167801 bp Feature: gene Location: 3167798-3168094 bp Feature: gene Location: 3168482-3169711 bp Ori: AUB37440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3168500-3169118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3168500-3169118 bp Feature: domain Description: GIIM Note: maturase Location: 3169178-3169373 bp Feature: domain Description: GIIM Note: maturase Location: 3169178-3169373 bp Feature: domain Description: McrA Location: 3169421-3169685 bp Feature: domain Description: McrA Location: 316942 1-3169685 bp Feature: gene Location: 3169729-3170169 bp Ori: AUB37441.1 Feature: domain Description: DUF5372 Location: 3169750-3169957 bp Feature: domain Description: DUF5372 Location: 3169750-3169957 bp Feature: gene Location: 3170181-3172259 bp Ori: AUB37442.1 Feature: domain Description: PinE Location: 3170220-3170853 bp Feature: domain Description: PinE Location: 31702 2 0-3170853 bp Feature: domain Description: Zn_ribbon_recom Location: 3171177-3171354 bp Feature: domain Description: Zn_ribbon_recom Location: 3171177-3171354 bp Feature: domain Description: HTH_17 Location: 3172074-3172194 bp Feature: domain Description: HTH_17 Location: 3172 074-3172 194 bp Feature: gene Location: 7815808-7816590 bp Ori: AUB42336.1 Feature: domain Description: YfmG Location: 7815811-7816570 bp Feature: domain Description: YfmG Location: 7815811-7816570 bp Feature: gene Location: 7816752-7817045 bp Ori: AUB42337.1 Feature: domain Description: Avd_like Location: 7816758-7817025 bp Feature: domain Description: Avd_like Location: 7816758-781702 5 bp Feature: gene Location: 7817066-7818136 bp Ori: AUB42338.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7817276-7817915 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 78172 76-7817915 bp Feature: gene Location: 7818585-7818806 bp Feature: gene Location: 7818973-7819107 bp Feature: gene Location: 8195841-8196068 bp Feature: gene Location: 8196115-8196270 bp Feature: gene Location: 8197017-8198405 bp Ori: AUB42758.1 Feature: domain Description: RVT_N Location: 8197062-8197308 bp Feature: domain Description: RVT_N Location: 8197062 -8197308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8197350-8197413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8197350-8197413 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8197419-8197854 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8197419-8197854 bp Feature: domain Description: HNH Note: nucleases Location: 8198121-8198256 bp Feature: domain Description: HNH Note: nucleases Location: 819812 1-81982 56 bp Feature: gene Location: 8198543-8200927 bp Ori: AUB42759.1 Feature: domain Description: MrcB Location: 8198672-8200754 bp Feature: domain Description: MrcB Location: 8198672 -82 00754 bp Feature: gene Location: 8201185-8201700 bp Ori: AUB42760.1 Feature: domain Description: FolK Location: 8201230-8201683 bp Feature: domain Description: FolK Location: 82 012 30-82 01683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), HTH_23 (pfam13384), INT_FimBE_like (cd01197), HNHc (smart00507), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), PinE (COG1961), Zn_ribbon_recom (pfam13408)
HTH_17 (pfam12728), DUF5372 (pfam17342), INTN1_C_like (cd01185), Int_alpha (smart00191), HemolysinCabind (pfam00353), COG2931 (Ca2+-binding protein, RTX toxin-related ), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, RVT_N (pfam13655)
group_II_RT_mat (TIGR04416), HNH (pfam01844), MrcB (COG0744), FolK (COG0801)