myRT

myRT report for GCA_002813595.1_ASM281359v1

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Seq: CP025080.1 Klebsiella pneumoniae strain SGH10 chromosome, complete genome (5485114 bp)
Overview 1 RT 1: 1759335-1765805 bp 2 RT 2: 3253947-3259310 bp 3 RT 3: 3327846-3336033 bp 4 RT 4: 4830285-4836094 bp Neighborhood of RT #1 [1759335, 1765819] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [3253947, 3259366] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #3 [3327846, 3336077] DUF968 PRK10597 RVT-GII YncE YncE FhlA EAL Neighborhood of RT #4 [4830285, 4836135] conj_conj_conj_TIGR03751 traC_PFL_4706 RVT-UG2 HTH_XRE SfsB Feature: gene Location: 1759335-1760759 bp Ori: AUB47081.1 Feature: domain Description: SbcB Location: 1759341-1760757 bp Feature: domain Description: SbcB Location: 1 759341 -1 760757 bp Feature: gene Location: 1761054-1762103 bp Ori: AUB47082.1 Feature: domain Description: dacD Location: 1761057-1762098 bp Feature: domain Description: dacD Location: 1 761 057-1 762098 bp Feature: gene Location: 1762623-1764107 bp Ori: AUB47083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763025-1763715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 763025-1 76371 5 bp Feature: gene Location: 1764189-1764662 bp Ori: AUB47084.1 Feature: domain Description: PRK10016 Location: 1764192-1764651 bp Feature: domain Description: PRK1 001 6 Location: 1 7641 92-1 764651 bp Feature: gene Location: 1764761-1765819 bp Ori: AUB47085.1 Feature: domain Description: YccC Location: 1764767-1765805 bp Feature: domain Description: YccC Location: 1 764767-1 765805 bp Feature: gene Location: 3253947-3255212 bp Ori: AUB48490.1 Feature: domain Description: umuC Location: 3253950-3255210 bp Feature: domain Description: umuC Location: 3253950-325521 0 bp Feature: gene Location: 3255215-3255634 bp Ori: AUB48491.1 Feature: domain Description: PRK10276 Location: 3255218-3255629 bp Feature: domain Description: PRK1 0276 Location: 325521 8-3255629 bp Feature: gene Location: 3255713-3257197 bp Ori: AUB48492.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256115-3256805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32561 1 5-3256805 bp Feature: gene Location: 3257814-3258056 bp Ori: AUB48493.1 Feature: domain Description: DinI Location: 3257865-3258045 bp Feature: domain Description: DinI Location: 3257865-3258045 bp Feature: gene Location: 3258227-3259366 bp Ori: AUB48494.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3258410-3259310 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 325841 0-325931 0 bp Feature: gene Location: 3327846-3328877 bp Ori: AUB48558.1 Feature: domain Description: DUF968 Location: 3328239-3328866 bp Feature: domain Description: DUF968 Location: 3328239-3328866 bp Feature: gene Location: 3329812-3330045 bp Ori: AUB48559.1 Feature: domain Description: PRK10597 Location: 3329815-3330040 bp Feature: domain Description: PRK1 0597 Location: 332981 5-3330040 bp Feature: gene Location: 3330124-3331608 bp Ori: AUB48560.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3330526-3331216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3330526-3331 21 6 bp Feature: gene Location: 3332564-3333970 bp Ori: AUB48561.1 Feature: domain Description: YncE Location: 3332615-3333425 bp Feature: domain Description: YncE Location: 333261 5-3333425 bp Feature: domain Description: YncE Location: 3333494-3333914 bp Feature: domain Description: YncE Location: 3333494-333391 4 bp Feature: gene Location: 3334314-3336077 bp Ori: AUB48562.1 Feature: domain Description: FhlA Location: 3334383-3334776 bp Feature: domain Description: FhlA Location: 3334383-3334776 bp Feature: domain Description: EAL Location: 3335319-3336033 bp Feature: domain Description: EAL Location: 333531 9-3336033 bp Feature: gene Location: 4830285-4830626 bp Ori: AUB49939.1 Feature: domain Description: conj_conj_conj_TIGR03751 Location: 4830294-4830612 bp Feature: domain Description: conj_conj_conj_TIGR03751 Location: 4830294-483061 2 bp Feature: gene Location: 4830623-4833253 bp Ori: AUB49940.1 Feature: domain Description: traC_PFL_4706 Location: 4830662-4833242 bp Feature: domain Description: traC_PFL_4706 Location: 4830662-4833242 bp Feature: gene Location: 4833741-4835018 bp Ori: AUB49941.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4833939-4834725 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4833939-4834725 bp Feature: gene Location: 4835526-4835756 bp Ori: AUB49942.1 Feature: domain Description: HTH_XRE Location: 4835568-4835736 bp Feature: domain Description: HTH_XRE Location: 4835568-4835736 bp Feature: gene Location: 4835860-4836135 bp Ori: AUB49943.1 Feature: domain Description: SfsB Location: 4835869-4836094 bp Feature: domain Description: SfsB Location: 4835869-4836094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), DUF968 (pfam06147)
PRK10597 (DNA damage-inducible protein I; Provisional), YncE (COG3391), FhlA (COG3604), EAL (smart00052), conj_conj_conj_TIGR03751, traC_PFL_4706 (TIGR03744), RVT-UG2, HTH_XRE (smart00530), SfsB (COG3423)

Seq: CP025081.1 Klebsiella pneumoniae strain SGH10 plasmid pSGH10, complete sequence (231583 bp)
Overview 1 RT 1: 214520-219014 bp Neighborhood of RT #1 [214520, 219014] DDE_Tnp_1 HHA RVT-GII INT_Cre_C Feature: gene Location: 214520-214999 bp Ori: AUB50771.1 Feature: domain Description: DDE_Tnp_1 Location: 214523-214955 bp Feature: domain Description: DDE_Tnp_1 Location: 2 1452 3-2 14955 bp Feature: gene Location: 215154-215405 bp Ori: AUB50772.1 Feature: domain Description: HHA Location: 215202-215385 bp Feature: domain Description: HHA Location: 2 152 02 -2 15385 bp Feature: gene Location: 216093-217409 bp Ori: AUB50773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216327-217017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1632 7-2 17017 bp Feature: gene Location: 217495-218631 bp Ori: AUB50774.1 Feature: domain Description: INT_Cre_C Location: 217918-218572 bp Feature: domain Description: INT_Cre_C Location: 2 17918-2 18572 bp Feature: gene Location: 218697-219014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)