myRT

myRT report for GCA_002813735.1_ASM281373v1

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Seq: CP017602.1 Legionella pneumophila strain D5945 chromosome, complete genome (3460779 bp)
Overview 1 RT 1: 802341-806681 bp 2 RT 2: 931755-937289 bp 3 RT 3: 2124139-2129943 bp 4 RT 4: 2273006-2279758 bp Neighborhood of RT #1 [802341, 806734] HTH_23 HTH_33 InsE RVT-GII RVT_1 GIIM PHA02517 COG3547 Neighborhood of RT #2 [931755, 937447] GT_WbpL_WbcO_like Beta_helix RVT-GII UDP_G4E_4_SDR_e GT_WbpL_WbcO_like Neighborhood of RT #3 [2124139, 2129943] ACH1 RVT-UG18 Neighborhood of RT #4 [2273006, 2279758] NTP-PPase_MazG_Cterm Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT_N RVT-GII GIIM Tra_M Feature: gene Location: 802341-802898 bp Feature: domain Description: HTH_23 Location: 802428-802551 bp Feature: domain Description: HTH_23 Location: 802428-802551 bp Feature: domain Description: HTH_33 Location: 802644-802809 bp Feature: domain Description: HTH_33 Location: 802644-802809 bp Feature: gene Location: 802991-803284 bp Ori: AUB70957.1 Feature: domain Description: InsE Location: 803000-803264 bp Feature: domain Description: InsE Location: 803000-803264 bp Feature: gene Location: 803821-804975 bp Ori: AUB70958.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804025-804223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804025-804223 bp Feature: domain Description: RVT_1 Location: 804277-804595 bp Feature: domain Description: RVT_1 Location: 804277-804595 bp Feature: domain Description: GIIM Note: maturase Location: 804673-804892 bp Feature: domain Description: GIIM Note: maturase Location: 804673-804892 bp Feature: gene Location: 805081-805338 bp Ori: AUB70959.1 Feature: domain Description: PHA02517 Location: 805084-805300 bp Feature: domain Description: PHA0251 7 Location: 805084-805300 bp Feature: gene Location: 805697-806734 bp Ori: AUB70960.1 Feature: domain Description: COG3547 Location: 805715-806681 bp Feature: domain Description: COG3547 Location: 80571 5-806681 bp Feature: gene Location: 931755-932672 bp Ori: AUB73151.1 Feature: domain Description: GT_WbpL_WbcO_like Location: 931758-932511 bp Feature: domain Description: GT_WbpL_WbcO_like Location: 931 758-93251 1 bp Feature: gene Location: 932787-934031 bp Ori: AUB71043.1 Feature: domain Description: Beta_helix Location: 932910-933288 bp Feature: domain Description: Beta_helix Location: 93291 0-933288 bp Feature: gene Location: 934718-935455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934922-935417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934922-93541 7 bp Feature: gene Location: 935506-936462 bp Ori: AUB71044.1 Feature: domain Description: UDP_G4E_4_SDR_e Location: 935515-936427 bp Feature: domain Description: UDP_G4E_4_SDR_e Location: 93551 5-936427 bp Feature: gene Location: 936533-937447 bp Ori: AUB73152.1 Feature: domain Description: GT_WbpL_WbcO_like Location: 936536-937289 bp Feature: domain Description: GT_WbpL_WbcO_like Location: 936536-937289 bp Feature: gene Location: 2124139-2125452 bp Ori: AUB72023.1 Feature: domain Description: ACH1 Location: 2124145-2125441 bp Feature: domain Description: ACH1 Location: 21 241 45-21 25441 bp Feature: gene Location: 2126258-2127271 bp Feature: gene Location: 2127769-2128131 bp Ori: AUB72025.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2127772-2128129 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 21 27772-21 281 29 bp Feature: gene Location: 2128156-2128419 bp Feature: gene Location: 2128630-2129943 bp Feature: gene Location: 2273006-2273383 bp Ori: AUB72151.1 Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2273033-2273369 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2273033-2273369 bp Feature: gene Location: 2273689-2275140 bp Ori: AUB72152.1 Feature: domain Description: Tnp_DNA_bind Location: 2273728-2273896 bp Feature: domain Description: Tnp_DNA_bind Location: 2273728-2273896 bp Feature: domain Description: DDE_Tnp_1 Location: 2274553-2274847 bp Feature: domain Description: DDE_Tnp_1 Location: 2274553-2274847 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2274853-2275132 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2274853-22751 32 bp Feature: gene Location: 2275211-2276731 bp Ori: AUB72153.1 Feature: domain Description: RVT_N Location: 2275268-2275511 bp Feature: domain Description: RVT_N Location: 2275268-227551 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275556-2276180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275556-22761 80 bp Feature: domain Description: GIIM Note: maturase Location: 2276231-2276465 bp Feature: domain Description: GIIM Note: maturase Location: 2276231 -2276465 bp Feature: gene Location: 2277579-2277953 bp Ori: AUB72154.1 Feature: domain Description: Tra_M Location: 2277627-2277822 bp Feature: domain Description: Tra_M Location: 2277627-2277822 bp Feature: gene Location: 2278151-2279758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), InsE (COG2963), RVT-GII, RVT_1 (pfam00078), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), GT_WbpL_WbcO_like (cd06854), Beta_helix (pfam13229)
UDP_G4E_4_SDR_e (cd05232), ACH1 (COG0427), RVT-UG18, NTP-PPase_MazG_Cterm (cd11529), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), RVT_N (pfam13655), Tra_M (pfam05261)