myRT

myRT report for GCA_002813775.1_ASM281377v1

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Seq: CP020372.1 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence (484824 bp)
Overview 1 RT 1: 383251-391220 bp Neighborhood of RT #1 [383251, 391264] TIGR03986 CRISPR_Cas6 RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 383251-385827 bp Ori: AUB85642.1 Feature: domain Description: TIGR03986 Location: 383530-385483 bp Feature: domain Description: TIGR03986 Location: 383530-385483 bp Feature: gene Location: 385892-387808 bp Feature: gene Location: 387729-390980 bp Ori: AUB85644.1 Feature: domain Description: CRISPR_Cas6 Location: 388509-388659 bp Feature: domain Description: CRISPR_Cas6 Location: 388509-388659 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 389046-389637 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 389046-389637 bp Feature: domain Description: Cas_Cas1 Location: 389997-390837 bp Feature: domain Description: Cas_Cas1 Location: 389997-390837 bp Feature: gene Location: 390983-391264 bp Ori: AUB85645.1 Feature: domain Description: Cas2_I_II_III Location: 390995-391220 bp Feature: domain Description: Cas2_I_II_III Location: 390995-391 220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)

Seq: CP020371.1 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence (416864 bp)
Overview 1 RT 1: 264419-269625 bp Neighborhood of RT #1 [264419, 269792] TnpB_IS66 DDE_Tnp_IS66 RVT_N RVT-GII DDE_5 SSB_OBF Feature: gene Location: 264419-264754 bp Ori: AUB85334.1 Feature: domain Description: TnpB_IS66 Location: 264425-264713 bp Feature: domain Description: TnpB_IS66 Location: 2 6442 5-2 64713 bp Feature: gene Location: 264769-266511 bp Ori: AUB85206.1 Feature: domain Description: DDE_Tnp_IS66 Location: 265447-266332 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 65447-2 66332 bp Feature: gene Location: 266629-267258 bp Ori: AUB85207.1 Feature: domain Description: RVT_N Location: 266680-266923 bp Feature: domain Description: RVT_N Location: 2 66680-2 6692 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266968-267142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 66968-2 67142 bp Feature: gene Location: 267833-269137 bp Ori: AUB85335.1 Feature: domain Description: DDE_5 Location: 267866-268655 bp Feature: domain Description: DDE_5 Location: 2 67866-2 68655 bp Feature: gene Location: 269343-269792 bp Ori: AUB85208.1 Feature: domain Description: SSB_OBF Location: 269361-269625 bp Feature: domain Description: SSB_OBF Location: 2 69361-2 6962 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, DDE_5 (pfam13546), SSB_OBF (cd04496)

Seq: CP020370.1 Candidatus Thiodictyon syntrophicum strain Cad16T chromosome, complete genome (6837296 bp)
Overview 1 RT 1: 2226267-2231669 bp 2 RT 2: 2747909-2758395 bp 3 RT 3: 2969875-2974454 bp 4 RT 4: 3493986-3501790 bp 5 RT 5: 4054517-4066399 bp 6 RT 6: 4447539-4455955 bp 7 RT 7: 5507050-5511491 bp 8 RT 8: 6675477-6679056 bp Neighborhood of RT #1 [2226267, 2231680] YfmG HRDC RVT-DGRs YfmG Fructosamin_kin Neighborhood of RT #2 [2747909, 2758592] TnpB_IS66 RVT-GII group_II_RT_mat UPF0236 UPF0236 Zn_Tnp_IS91 Y2_Tnp integrase_gron integrase_gron RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #3 [2969875, 2974480] PRK14164 pfam03781 RVT-DGRs Hrd YfmG Neighborhood of RT #4 [3493986, 3501816] pfam13191 YfmG Avd_like RVT-DGRs MsbA_rel Neighborhood of RT #5 [4054517, 4067520] Zn_Tnp_IS91 Y2_Tnp integrase_gron integrase_gron RVT-GII Transglut_core RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat YD_repeat_2x RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core RHS_repeat Neighborhood of RT #6 [4447539, 4456032] InsA DDE_Tnp_IS66 RVT-GII DDE_Tnp_1_4 PIN Neighborhood of RT #7 [5507050, 5511559] PIN_VapC4-5_FitB-like DUF2887 fliH RVT-DGRs MutS_I Avd_like DUF1566 Neighborhood of RT #8 [6675477, 6679056] DUF1778 Acetyltransf_1 RVT-GII Feature: gene Location: 2226267-2227103 bp Ori: AUB84709.1 Feature: domain Description: YfmG Location: 2226276-2226954 bp Feature: domain Description: YfmG Location: 2226276-2226954 bp Feature: gene Location: 2227201-2227764 bp Ori: AUB81153.1 Feature: domain Description: HRDC Location: 2227498-2227696 bp Feature: domain Description: HRDC Location: 2227498-2227696 bp Feature: gene Location: 2227695-2228780 bp Ori: AUB81154.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2227977-2228559 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2227977-2228559 bp Feature: gene Location: 2229549-2230463 bp Ori: AUB81155.1 Feature: domain Description: YfmG Location: 2229675-2230347 bp Feature: domain Description: YfmG Location: 2229675-223 03 47 bp Feature: gene Location: 2230802-2231680 bp Ori: AUB81156.1 Feature: domain Description: Fructosamin_kin Location: 2230814-2231669 bp Feature: domain Description: Fructosamin_kin Location: 223 0814-223 1669 bp Feature: gene Location: 2747909-2748208 bp Feature: domain Description: TnpB_IS66 Location: 2747927-2748209 bp Feature: domain Description: TnpB_IS66 Location: 2747927-2748209 bp Feature: gene Location: 2748205-2748615 bp Feature: gene Location: 2748805-2749395 bp Ori: AUB81506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748811-2748997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748811-2748997 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2748997-2749264 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2748997-2749264 bp Feature: gene Location: 2749312-2750598 bp Ori: AUB81507.1 Feature: domain Description: UPF0236 Location: 2749381-2749597 bp Feature: domain Description: UPF023 6 Location: 27493 81-2749597 bp Feature: domain Description: UPF0236 Location: 2750131-2750551 bp Feature: domain Description: UPF023 6 Location: 275013 1-2750551 bp Feature: gene Location: 2752263-2753420 bp Ori: AUB81508.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2752302-2752557 bp Feature: domain Description: Zn_Tnp_IS91 Location: 27523 02-2752557 bp Feature: domain Description: Y2_Tnp Location: 2752683-2753223 bp Feature: domain Description: Y2_Tnp Location: 2752683 -2753 223 bp Feature: gene Location: 2753413-2754261 bp Ori: AUB81509.1 Feature: domain Description: integrase_gron Location: 2753434-2753956 bp Feature: domain Description: integrase_gron Location: 2753 43 4-2753 956 bp Feature: domain Description: integrase_gron Location: 2754007-2754202 bp Feature: domain Description: integrase_gron Location: 2754007-2754202 bp Feature: gene Location: 2754958-2756421 bp Ori: AUB81510.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2755375-2756044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27553 75-2756044 bp Feature: domain Description: GIIM Note: maturase Location: 2756122-2756311 bp Feature: domain Description: GIIM Note: maturase Location: 2756122-27563 11 bp Feature: gene Location: 2756792-2757076 bp Feature: gene Location: 2757435-2758592 bp Ori: AUB81512.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2757474-2757729 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2757474-2757729 bp Feature: domain Description: Y2_Tnp Location: 2757855-2758395 bp Feature: domain Description: Y2_Tnp Location: 2757855-27583 95 bp Feature: gene Location: 2969875-2970432 bp Ori: AUB81689.1 Feature: domain Description: PRK14164 Location: 2969962-2970391 bp Feature: domain Description: PRK14164 Location: 2969962-29703 91 bp Feature: gene Location: 2970832-2971629 bp Ori: AUB81690.1 Feature: domain Description: pfam03781 Location: 2970928-2971603 bp Feature: domain Description: pfam03 781 Location: 2970928-2971603 bp Feature: gene Location: 2971808-2972794 bp Ori: AUB81691.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2972018-2972603 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2972018-2972603 bp Feature: gene Location: 2972791-2973468 bp Ori: AUB81692.1 Feature: domain Description: Hrd Location: 2973184-2973391 bp Feature: domain Description: Hrd Location: 2973 184-2973 3 91 bp Feature: gene Location: 2973665-2974480 bp Ori: AUB81693.1 Feature: domain Description: YfmG Location: 2973755-2974454 bp Feature: domain Description: YfmG Location: 2973 755-2974454 bp Feature: gene Location: 3493986-3496988 bp Ori: AUB82059.1 Feature: domain Description: pfam13191 Location: 3494760-3495162 bp Feature: domain Description: pfam13 191 Location: 3 494760-3 495162 bp Feature: domain Description: YfmG Location: 3496194-3496983 bp Feature: domain Description: YfmG Location: 3 496194-3 496983 bp Feature: gene Location: 3497370-3497771 bp Ori: AUB82060.1 Feature: domain Description: Avd_like Location: 3497406-3497706 bp Feature: domain Description: Avd_like Location: 3 497406-3 497706 bp Feature: gene Location: 3497768-3498835 bp Ori: AUB82061.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3497975-3498617 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 497975-3 498617 bp Feature: gene Location: 3499466-3499648 bp Feature: gene Location: 3500020-3501816 bp Ori: AUB82063.1 Feature: domain Description: MsbA_rel Location: 3500068-3501790 bp Feature: domain Description: MsbA_rel Location: 3 500068-3 501790 bp Feature: gene Location: 4054517-4055674 bp Ori: AUB82454.1 Feature: domain Description: Zn_Tnp_IS91 Location: 4054556-4054811 bp Feature: domain Description: Zn_Tnp_IS91 Location: 4054556-4054811 bp Feature: domain Description: Y2_Tnp Location: 4054937-4055477 bp Feature: domain Description: Y2_Tnp Location: 405493 7-4055477 bp Feature: gene Location: 4055667-4056515 bp Ori: AUB82455.1 Feature: domain Description: integrase_gron Location: 4055688-4056210 bp Feature: domain Description: integrase_gron Location: 4055688-4056210 bp Feature: domain Description: integrase_gron Location: 4056261-4056456 bp Feature: domain Description: integrase_gron Location: 4056261-4056456 bp Feature: gene Location: 4057235-4058509 bp Ori: AUB82456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4057493-4058162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4057493 -4058162 bp Feature: gene Location: 4059989-4066165 bp Ori: AUB82457.1 Feature: domain Description: Transglut_core Location: 4060409-4060778 bp Feature: domain Description: Transglut_core Location: 4060409-4060778 bp Feature: domain Description: RHS_repeat Location: 4062677-4062782 bp Feature: domain Description: RHS_repeat Location: 4062677-4062782 bp Feature: domain Description: RHS_repeat Location: 4062800-4062899 bp Feature: domain Description: RHS_repeat Location: 4062800-4062899 bp Feature: domain Description: RHS_repeat Location: 4062992-4063049 bp Feature: domain Description: RHS_repeat Location: 4062992-4063 049 bp Feature: domain Description: RHS_repeat Location: 4063115-4063217 bp Feature: domain Description: RHS_repeat Location: 4063 115-4063 217 bp Feature: domain Description: RHS_repeat Location: 4063373-4063454 bp Feature: domain Description: RHS_repeat Location: 4063 3 73 -4063 454 bp Feature: domain Description: RHS_repeat Location: 4063592-4063712 bp Feature: domain Description: RHS_repeat Location: 4063 592-4063 712 bp Feature: domain Description: YD_repeat_2x Location: 4063748-4063853 bp Feature: domain Description: YD_repeat_2x Location: 4063 748-4063 853 bp Feature: domain Description: RHS_repeat Location: 4064300-4064402 bp Feature: domain Description: RHS_repeat Location: 40643 00-4064402 bp Feature: domain Description: RHS_repeat Location: 4064495-4064585 bp Feature: domain Description: RHS_repeat Location: 4064495-4064585 bp Feature: domain Description: RHS_repeat Location: 4064624-4064735 bp Feature: domain Description: RHS_repeat Location: 4064624-406473 5 bp Feature: domain Description: RHS_repeat Location: 4065017-4065101 bp Feature: domain Description: RHS_repeat Location: 4065017-4065101 bp Feature: domain Description: Rhs_assc_core Location: 4065338-4065554 bp Feature: domain Description: Rhs_assc_core Location: 40653 3 8-4065554 bp Feature: gene Location: 4066249-4067520 bp Ori: AUB82458.1 Feature: domain Description: RHS_repeat Location: 4066312-4066399 bp Feature: domain Description: RHS_repeat Location: 40663 12-40663 99 bp Feature: gene Location: 4447539-4448549 bp Ori: AUB82733.1 Feature: domain Description: InsA Location: 4447548-4447830 bp Feature: domain Description: InsA Location: 4447548-444783 0 bp Feature: gene Location: 4448609-4449691 bp Ori: AUB82734.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4448627-4449512 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4448627-4449512 bp Feature: gene Location: 4450994-4452160 bp Ori: AUB82735.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4451159-4451783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4451159-4451783 bp Feature: gene Location: 4452491-4453888 bp Ori: AUB82736.1 Feature: domain Description: DDE_Tnp_1_4 Location: 4452530-4453853 bp Feature: domain Description: DDE_Tnp_1_4 Location: 445253 0-4453 853 bp Feature: gene Location: 4455589-4456032 bp Ori: AUB84837.1 Feature: domain Description: PIN Location: 4455601-4455955 bp Feature: domain Description: PIN Location: 4455601-4455955 bp Feature: gene Location: 5507050-5507478 bp Ori: AUB83561.1 Feature: domain Description: PIN_VapC4-5_FitB-like Location: 5507065-5507467 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 5507065-5507467 bp Feature: gene Location: 5507549-5508448 bp Ori: AUB84905.1 Feature: domain Description: DUF2887 Location: 5507558-5508146 bp Feature: domain Description: DUF2887 Location: 5507558-5508146 bp Feature: domain Description: fliH Location: 5508170-5508284 bp Feature: domain Description: fliH Location: 5508170-5508284 bp Feature: gene Location: 5508495-5510315 bp Ori: AUB83562.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5508963-5509650 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5508963 -5509650 bp Feature: domain Description: MutS_I Location: 5509959-5510250 bp Feature: domain Description: MutS_I Location: 5509959-5510250 bp Feature: gene Location: 5510353-5510778 bp Ori: AUB83563.1 Feature: domain Description: Avd_like Location: 5510380-5510689 bp Feature: domain Description: Avd_like Location: 55103 80-5510689 bp Feature: gene Location: 5510942-5511559 bp Ori: AUB83564.1 Feature: domain Description: DUF1566 Location: 5511074-5511491 bp Feature: domain Description: DUF1566 Location: 5511074-5511491 bp Feature: gene Location: 6675477-6675752 bp Ori: AUB84466.1 Feature: domain Description: DUF1778 Location: 6675495-6675726 bp Feature: domain Description: DUF1778 Location: 6675495-6675726 bp Feature: gene Location: 6675745-6676260 bp Ori: AUB84988.1 Feature: domain Description: Acetyltransf_1 Location: 6675859-6676180 bp Feature: domain Description: Acetyltransf_1 Location: 6675859-6676180 bp Feature: gene Location: 6676493-6677827 bp Ori: AUB84467.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6676751-6677438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6676751-667743 8 bp Feature: gene Location: 6678089-6678302 bp Feature: gene Location: 6678847-6679056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs, Fructosamin_kin (pfam03881), TnpB_IS66 (pfam05717), RVT-GII, group_II_RT_mat (TIGR04416), UPF0236 (pfam06782), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)
integrase_gron (TIGR02249), GIIM (pfam08388), PRK14164 (heat shock protein GrpE; Provisional), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Hrd (LOAD_Hrd), pfam13191 (AAA_16;AAA ATPase domain), Avd_like (cd16376), MsbA_rel (TIGR02204), Transglut_core (pfam01841), RHS_repeat (pfam05593)
YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696), InsA (COG3677), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_1_4 (pfam13701), PIN (pfam01850), PIN_VapC4-5_FitB-like (cd18754), DUF2887 (pfam11103), fliH (PRK13386), MutS_I (pfam01624)
DUF1566 (pfam07603), DUF1778 (pfam08681), Acetyltransf_1 (pfam00583)