myRT

myRT report for GCA_002813875.1_ASM281387v1

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Seq: CP024655.1 Bacillus cereus strain MLY1 chromosome MLY1.0, complete sequence (5561815 bp)
Overview 1 RT 1: 66979-69616 bp 2 RT 2: 794283-798415 bp 3 RT 3: 1930060-1936809 bp 4 RT 4: 4946699-4951847 bp Neighborhood of RT #1 [66979, 69616] DEDD_Tnp_IS110 COG3547 RVT-GII GIIM Neighborhood of RT #2 [794283, 798414] PRK14483 RVT-GII Intron_maturas2 HNHc DHAK_reg Neighborhood of RT #3 [1930060, 1936814] TED COG4932 SpaA RVT-GII Intron_maturas2 HNHc SpaA TQ TQ TQ LPXTG_anchor Neighborhood of RT #4 [4946699, 4952164] DEDD_Tnp_IS110 COG3547 RVT-GII PRK10420 Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 66979-68172 bp Ori: AUB61619.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 66991-67465 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 66991 -67465 bp Feature: domain Description: COG3547 Location: 67687-68110 bp Feature: domain Description: COG3547 Location: 67687-681 1 0 bp Feature: gene Location: 68223-68447 bp Feature: gene Location: 68448-69017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68469-68559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68469-68559 bp Feature: domain Description: GIIM Note: maturase Location: 68619-68826 bp Feature: domain Description: GIIM Note: maturase Location: 6861 9-68826 bp Feature: gene Location: 69120-69401 bp Feature: gene Location: 69410-69616 bp Feature: gene Location: 794283-795281 bp Ori: AUB62277.1 Gene: dhaK2 Feature: domain Description: PRK14483 Location: 794286-795279 bp Feature: domain Description: PRK1 4483 Location: 794286-795279 bp Feature: gene Location: 795301-795375 bp Feature: gene Location: 796003-797823 bp Ori: AUB62278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796267-797095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796267-797095 bp Feature: domain Description: Intron_maturas2 Location: 797233-797467 bp Feature: domain Description: Intron_maturas2 Location: 797233-797467 bp Feature: domain Description: HNHc Note: nucleases Location: 797647-797794 bp Feature: domain Description: HNHc Note: nucleases Location: 797647-797794 bp Feature: gene Location: 797824-797922 bp Feature: gene Location: 797923-798414 bp Feature: domain Description: DHAK_reg Location: 797935-798415 bp Feature: domain Description: DHAK_reg Location: 797935-79841 5 bp Feature: gene Location: 1930060-1930413 bp Feature: gene Location: 1930986-1932689 bp Feature: domain Description: TED Location: 1931178-1931445 bp Feature: domain Description: TED Location: 1 931 1 78-1 931 445 bp Feature: domain Description: COG4932 Location: 1931451-1932330 bp Feature: domain Description: COG4932 Location: 1 931 451 -1 932330 bp Feature: domain Description: SpaA Location: 1932420-1932609 bp Feature: domain Description: SpaA Location: 1 932420-1 932609 bp Feature: gene Location: 1933316-1935136 bp Ori: AUB63401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1933580-1934408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 933580-1 934408 bp Feature: domain Description: Intron_maturas2 Location: 1934546-1934780 bp Feature: domain Description: Intron_maturas2 Location: 1 934546-1 934780 bp Feature: domain Description: HNHc Note: nucleases Location: 1934960-1935107 bp Feature: domain Description: HNHc Note: nucleases Location: 1 934960-1 9351 07 bp Feature: gene Location: 1935137-1935229 bp Feature: gene Location: 1935237-1936814 bp Feature: domain Description: SpaA Location: 1935243-1935438 bp Feature: domain Description: SpaA Location: 1 935243-1 935438 bp Feature: domain Description: TQ Location: 1935477-1935834 bp Feature: domain Description: TQ Location: 1 935477-1 935834 bp Feature: domain Description: TQ Location: 1935846-1936203 bp Feature: domain Description: TQ Location: 1 935846-1 936203 bp Feature: domain Description: TQ Location: 1936215-1936572 bp Feature: domain Description: TQ Location: 1 93621 5-1 936572 bp Feature: domain Description: LPXTG_anchor Location: 1936713-1936809 bp Feature: domain Description: LPXTG_anchor Location: 1 93671 3-1 936809 bp Feature: gene Location: 4946699-4947001 bp Feature: gene Location: 4947415-4948560 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4947430-4947904 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 4947430-4947904 bp Feature: domain Description: COG3547 Location: 4948150-4948519 bp Feature: domain Description: COG3547 Location: 49481 50-494851 9 bp Feature: gene Location: 4948490-4948720 bp Ori: AUB66943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4948538-4948658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4948538-4948658 bp Feature: gene Location: 4948921-4950582 bp Ori: AUB66243.1 Feature: domain Description: PRK10420 Location: 4948924-4950580 bp Feature: domain Description: PRK1 0420 Location: 4948924-4950580 bp Feature: gene Location: 4950911-4952164 bp Ori: AUB66244.1 Feature: domain Description: Zn_Tnp_IS91 Location: 4950953-4951220 bp Feature: domain Description: Zn_Tnp_IS91 Location: 4950953-4951 220 bp Feature: domain Description: Y2_Tnp Location: 4951337-4951847 bp Feature: domain Description: Y2_Tnp Location: 4951 337-4951 847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PRK14483 (DhaKLM operon coactivator DhaQ; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507), DHAK_reg (TIGR02366), TED (pfam08341), COG4932 (Uncharacterized surface anchored protein )
SpaA (pfam17802), TQ (pfam18202), LPXTG_anchor (TIGR01167), PRK10420 (L-lactate permease; Provisional), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: CP024658.1 Bacillus cereus strain MLY1 plasmid pMLY1.3, complete sequence (124659 bp)
Overview 1 RT 1: 5357-11309 bp 2 RT 2: 106028-110613 bp Neighborhood of RT #1 [5357, 11356] PDDEXK_2 RVT-GII HNHc PDDEXK_2 SR_ResInv HTH_49 Neighborhood of RT #2 [106028, 110615] RVT_N RVT-GII GIIM HNHc ParE-like_toxin Feature: gene Location: 5357-6920 bp Feature: gene Location: 7317-7475 bp Feature: domain Description: PDDEXK_2 Location: 7344-7473 bp Feature: domain Description: PDDEXK_2 Location: 7344-7473 bp Feature: gene Location: 8248-10053 bp Ori: AUB67196.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8545-9247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8545-92 47 bp Feature: domain Description: HNHc Note: nucleases Location: 9805-9937 bp Feature: domain Description: HNHc Note: nucleases Location: 9805-9937 bp Feature: gene Location: 10156-10701 bp Feature: domain Description: PDDEXK_2 Location: 10159-10702 bp Feature: domain Description: PDDEXK_2 Location: 10159-10702 bp Feature: gene Location: 10772-11356 bp Ori: AUB67197.1 Feature: domain Description: SR_ResInv Location: 10778-11150 bp Feature: domain Description: SR_ResInv Location: 10778-11150 bp Feature: domain Description: HTH_49 Location: 11225-11309 bp Feature: domain Description: HTH_49 Location: 112 2 5-11309 bp Feature: gene Location: 106028-106339 bp Feature: gene Location: 106643-106849 bp Feature: gene Location: 107529-109355 bp Ori: AUB67296.1 Gene: ltrA Feature: domain Description: RVT_N Location: 107577-107823 bp Feature: domain Description: RVT_N Location: 107577-10782 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107877-108546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107877-108546 bp Feature: domain Description: GIIM Note: maturase Location: 108606-108840 bp Feature: domain Description: GIIM Note: maturase Location: 108606-108840 bp Feature: domain Description: HNHc Note: nucleases Location: 109038-109206 bp Feature: domain Description: HNHc Note: nucleases Location: 109038-1092 06 bp Feature: gene Location: 109852-110275 bp Feature: gene Location: 110340-110615 bp Ori: AUB67297.1 Feature: domain Description: ParE-like_toxin Location: 110364-110613 bp Feature: domain Description: ParE-like_toxin Location: 110364-110613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-GII, HNHc (smart00507), SR_ResInv (cd03768), HTH_49 (pfam18010), RVT_N (pfam13655), GIIM (pfam08388), ParE-like_toxin (pfam15781)

Seq: CP024656.1 Bacillus cereus strain MLY1 plasmid pMLY1.2, complete sequence (102005 bp)
Overview 1 RT 1: 28704-33663 bp Neighborhood of RT #1 [28704, 33698] SpaA RVT-GII Intron_maturas2 HNHc TED COG4932 HTH_XRE Feature: gene Location: 28704-29252 bp Feature: domain Description: SpaA Location: 28710-28905 bp Feature: domain Description: SpaA Location: 28710-28905 bp Feature: gene Location: 29254-29352 bp Feature: gene Location: 29353-31173 bp Ori: AUB66990.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29617-30445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29617-3 0445 bp Feature: domain Description: Intron_maturas2 Location: 30583-30817 bp Feature: domain Description: Intron_maturas2 Location: 3 0583 -3 0817 bp Feature: domain Description: HNHc Note: nucleases Location: 30997-31144 bp Feature: domain Description: HNHc Note: nucleases Location: 3 0997-3 1144 bp Feature: gene Location: 31800-33239 bp Feature: domain Description: TED Location: 32001-32262 bp Feature: domain Description: TED Location: 3 2001-3 2262 bp Feature: domain Description: COG4932 Location: 32661-33234 bp Feature: domain Description: COG493 2 Location: 3 2661-3 3 23 4 bp Feature: gene Location: 33471-33698 bp Ori: AUB66991.1 Feature: domain Description: HTH_XRE Location: 33501-33663 bp Feature: domain Description: HTH_XRE Location: 3 3 501-3 3 663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpaA (pfam17802), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TED (pfam08341), COG4932 (Uncharacterized surface anchored protein ), HTH_XRE (smart00530)

Seq: CP024657.1 Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence (158531 bp)
Overview 1 RT 1: 134215-138952 bp Neighborhood of RT #1 [134215, 138957] TraG-D_C RVT-GII Intron_maturas2 HNHc VirD4 Maff2 Feature: gene Location: 134215-134799 bp Feature: domain Description: TraG-D_C Location: 134218-134542 bp Feature: domain Description: TraG-D_C Location: 134 218-134 54 2 bp Feature: gene Location: 134795-134899 bp Feature: gene Location: 134904-136712 bp Ori: AUB67172.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135168-135990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135168-135990 bp Feature: domain Description: Intron_maturas2 Location: 136062-136392 bp Feature: domain Description: Intron_maturas2 Location: 136062-136392 bp Feature: domain Description: HNHc Note: nucleases Location: 136527-136683 bp Feature: domain Description: HNHc Note: nucleases Location: 136527-136683 bp Feature: gene Location: 137321-138562 bp Feature: domain Description: VirD4 Location: 137561-138563 bp Feature: domain Description: VirD4 Location: 137561-138563 bp Feature: gene Location: 138742-138957 bp Ori: AUB67173.1 Feature: domain Description: Maff2 Location: 138745-138952 bp Feature: domain Description: Maff2 Location: 13874 5-138952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), Maff2 (pfam12750)