myRT

myRT report for GCA_002831545.1_ASM283154v1

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Seq: CP025095.1 Streptococcus suis strain HN136 chromosome, complete genome (2719245 bp)
Overview 1 RT 1: 1126293-1134030 bp 2 RT 2: 1289991-1299580 bp Neighborhood of RT #1 [1126293, 1134068] PrgI TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #2 [1289991, 1299580] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 1126293-1126646 bp Ori: AUC91405.1 Feature: domain Description: PrgI Location: 1126305-1126578 bp Feature: domain Description: PrgI Location: 1 1 26305-1 1 26578 bp Feature: gene Location: 1126624-1128096 bp Ori: AUC91406.1 Feature: domain Description: TraC-F-type Location: 1126999-1127785 bp Feature: domain Description: TraC-F-type Location: 1 1 26999-1 1 27785 bp Feature: gene Location: 1128625-1130298 bp Ori: AUC91407.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1128697-1128937 bp Feature: domain Description: RVT_N Location: 1 1 28697-1 1 28937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128985-1129645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 28985-1 1 29645 bp Feature: domain Description: GIIM Note: maturase Location: 1129714-1129933 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 2971 4-1 1 29933 bp Feature: gene Location: 1130303-1131265 bp Ori: AUC91408.1 Feature: domain Description: TraC-F-type Location: 1130396-1131092 bp Feature: domain Description: TraC-F-type Location: 1 1 30396-1 1 31 092 bp Feature: gene Location: 1131267-1134068 bp Ori: AUC91409.1 Feature: domain Description: Peptidase_M23 Location: 1132710-1132911 bp Feature: domain Description: Peptidase_M23 Location: 1 1 3271 0-1 1 3291 1 bp Feature: domain Description: Phage_lysozyme2 Location: 1133064-1133577 bp Feature: domain Description: Phage_lysozyme2 Location: 1 1 33064-1 1 33577 bp Feature: domain Description: PRK08581 Location: 1133694-1134030 bp Feature: domain Description: PRK08581 Location: 1 1 33694-1 1 34030 bp Feature: gene Location: 1289991-1295453 bp Ori: AUC91546.1 Feature: domain Description: N6_Mtase Location: 1292004-1292595 bp Feature: domain Description: N6_Mtase Location: 1 292004-1 292595 bp Feature: domain Description: COG4646 Location: 1293186-1295310 bp Feature: domain Description: COG4646 Location: 1 2931 86-1 29531 0 bp Feature: gene Location: 1295427-1295552 bp Feature: gene Location: 1295951-1297729 bp Ori: AUC91547.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1296212-1297004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 29621 2-1 297004 bp Feature: domain Description: Intron_maturas2 Location: 1297109-1297340 bp Feature: domain Description: Intron_maturas2 Location: 1 2971 09-1 297340 bp Feature: domain Description: HNHc Note: nucleases Location: 1297505-1297691 bp Feature: domain Description: HNHc Note: nucleases Location: 1 297505-1 297691 bp Feature: gene Location: 1297822-1299210 bp Feature: domain Description: KOG1000 Location: 1298146-1298461 bp Feature: domain Description: KOG1 000 Location: 1 2981 46-1 298461 bp Feature: gene Location: 1299281-1299580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )
Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )