myRT

myRT report for GCA_002831605.1_ASM283160v1

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Seq: CP025115.1 Alteromonas sp. MB-3u-76 chromosome, complete genome (4360928 bp)
Overview 1 RT 1: 273348-279444 bp 2 RT 2: 576915-580678 bp 3 RT 3: 1620989-1626894 bp 4 RT 4: 1738313-1745188 bp 5 RT 5: 2527197-2536554 bp Neighborhood of RT #1 [273348, 279503] COG4188 RVT-GII GIIM COG3547 TPR TPR_19 Neighborhood of RT #2 [576915, 580678] RelE arc_metj RVT-GII GIIM Neighborhood of RT #3 [1620989, 1626894] RVT-GII GIIM KOG2741 Neighborhood of RT #4 [1738313, 1745217] YafD BON BON RVT-GII GIIM PRK09257 NRDE Neighborhood of RT #5 [2527197, 2536637] PRK11302 PRK05826 RVT-GII GIIM DUF3800 RVT-GII GIIM yhbS YciI Feature: gene Location: 273348-274637 bp Ori: AUC86976.1 Feature: domain Description: COG4188 Location: 273558-274266 bp Feature: domain Description: COG41 88 Location: 273558-274266 bp Feature: gene Location: 274695-274877 bp Feature: gene Location: 275447-276718 bp Ori: AUC86977.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275660-276281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275660-276281 bp Feature: domain Description: GIIM Note: maturase Location: 276326-276548 bp Feature: domain Description: GIIM Note: maturase Location: 276326-276548 bp Feature: gene Location: 276833-277870 bp Ori: AUC86978.1 Feature: domain Description: COG3547 Location: 276848-277823 bp Feature: domain Description: COG3547 Location: 276848-277823 bp Feature: gene Location: 278403-279503 bp Ori: AUC86979.1 Feature: domain Description: TPR Location: 278784-279033 bp Feature: domain Description: TPR Location: 278784-279033 bp Feature: domain Description: TPR_19 Location: 279357-279444 bp Feature: domain Description: TPR_1 9 Location: 279357-279444 bp Feature: gene Location: 576915-577178 bp Ori: AUC87210.1 Feature: domain Description: RelE Location: 576924-577173 bp Feature: domain Description: RelE Location: 576924-5771 73 bp Feature: gene Location: 577165-577398 bp Ori: AUC87211.1 Feature: domain Description: arc_metj Location: 577183-577303 bp Feature: domain Description: arc_metj Location: 5771 83-577303 bp Feature: gene Location: 578059-579408 bp Ori: AUC87212.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578338-578971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578338-578971 bp Feature: domain Description: GIIM Note: maturase Location: 579013-579238 bp Feature: domain Description: GIIM Note: maturase Location: 57901 3-579238 bp Feature: gene Location: 579477-580283 bp Feature: gene Location: 580412-580678 bp Feature: gene Location: 1620989-1621384 bp Feature: gene Location: 1622153-1622347 bp Feature: gene Location: 1622941-1624290 bp Ori: AUC88017.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623220-1623853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 623220-1 623853 bp Feature: domain Description: GIIM Note: maturase Location: 1623895-1624120 bp Feature: domain Description: GIIM Note: maturase Location: 1 623895-1 6241 20 bp Feature: gene Location: 1625398-1626372 bp Ori: AUC88018.1 Feature: domain Description: KOG2741 Location: 1625410-1626364 bp Feature: domain Description: KOG2741 Location: 1 62541 0-1 626364 bp Feature: gene Location: 1626499-1626894 bp Feature: gene Location: 1738313-1739302 bp Ori: AUC88100.1 Feature: domain Description: YafD Location: 1738340-1739288 bp Feature: domain Description: YafD Location: 1 738340-1 739288 bp Feature: gene Location: 1739722-1740342 bp Ori: AUC88101.1 Feature: domain Description: BON Location: 1739839-1740037 bp Feature: domain Description: BON Location: 1 739839-1 740037 bp Feature: domain Description: BON Location: 1740121-1740322 bp Feature: domain Description: BON Location: 1 7401 21 -1 740322 bp Feature: gene Location: 1740966-1742315 bp Ori: AUC88102.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741245-1741878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 741 245-1 741 878 bp Feature: domain Description: GIIM Note: maturase Location: 1741920-1742145 bp Feature: domain Description: GIIM Note: maturase Location: 1 741 920-1 7421 45 bp Feature: gene Location: 1743073-1744263 bp Ori: AUC88103.1 Feature: domain Description: PRK09257 Location: 1743079-1744261 bp Feature: domain Description: PRK09257 Location: 1 743079-1 744261 bp Feature: gene Location: 1744435-1745217 bp Ori: AUC90222.1 Feature: domain Description: NRDE Location: 1744438-1745188 bp Feature: domain Description: NRDE Location: 1 744438-1 7451 88 bp Feature: gene Location: 2527197-2528048 bp Ori: AUC88684.1 Feature: domain Description: PRK11302 Location: 2527200-2528040 bp Feature: domain Description: PRK1 1 302 Location: 2527200-2528040 bp Feature: gene Location: 2528379-2529815 bp Ori: AUC88685.1 Gene: pyk Feature: domain Description: PRK05826 Location: 2528382-2529780 bp Feature: domain Description: PRK05826 Location: 2528382-2529780 bp Feature: gene Location: 2529947-2531296 bp Ori: AUC88686.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2530226-2530859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2530226-2530859 bp Feature: domain Description: GIIM Note: maturase Location: 2530901-2531126 bp Feature: domain Description: GIIM Note: maturase Location: 2530901 -2531 1 26 bp Feature: gene Location: 2531982-2532443 bp Feature: gene Location: 2532735-2533424 bp Ori: AUC88688.1 Feature: domain Description: DUF3800 Location: 2532747-2533332 bp Feature: domain Description: DUF3800 Location: 2532747-2533332 bp Feature: gene Location: 2533501-2534850 bp Ori: AUC88689.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2533780-2534413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2533780-253441 3 bp Feature: domain Description: GIIM Note: maturase Location: 2534455-2534680 bp Feature: domain Description: GIIM Note: maturase Location: 2534455-2534680 bp Feature: gene Location: 2535511-2536017 bp Ori: AUC88690.1 Feature: domain Description: yhbS Location: 2535520-2536006 bp Feature: domain Description: yhbS Location: 2535520-2536006 bp Feature: gene Location: 2536170-2536637 bp Ori: AUC88691.1 Feature: domain Description: YciI Location: 2536338-2536554 bp Feature: domain Description: YciI Location: 2536338-2536554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4188 (Predicted dienelactone hydrolase ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), TPR (smart00028), TPR_19 (pfam14559), RelE (pfam06296), arc_metj (LOAD_arc_metj), KOG2741 (KOG2741, Dimeric dihydrodiol dehydrogenase ), YafD (COG3021)
BON (smart00749), PRK09257 (aromatic amino acid transaminase), NRDE (COG3332), PRK11302 (DNA-binding transcriptional regulator HexR; Provisional), PRK05826 (pyruvate kinase; Provisional), DUF3800 (pfam12686), yhbS (COG3153), YciI (COG2350)