myRT

myRT report for GCA_002831665.1_ASM283166v1

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Seq: CP025118.1 Lacinutrix sp. Bg11-31 chromosome, complete genome (3666763 bp)
Overview 1 RT 1: 260-10585 bp 2 RT 2: 1451317-1455158 bp Neighborhood of RT #1 [260, 10596] WGR_DNA_ligase SWIM RVT-Retrons DEXSc_Pif1_like KOG0987 HRDC HTH_40 SCAD_SBCAD Neighborhood of RT #2 [1451317, 1455158] RVT-UNC Feature: gene Location: 260-3319 bp Ori: AUC80601.1 Feature: domain Description: WGR_DNA_ligase Location: 278-497 bp Feature: domain Description: WGR_DNA_ligase Location: 278-497 bp Feature: gene Location: 3324-4952 bp Ori: AUC80602.1 Feature: domain Description: SWIM Location: 4839-4926 bp Feature: domain Description: SWIM Location: 4839-4926 bp Feature: gene Location: 5214-6716 bp Ori: AUC80603.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5763-6378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5763-6378 bp Feature: gene Location: 6959-9397 bp Ori: AUC80604.1 Feature: domain Description: DEXSc_Pif1_like Location: 7010-7532 bp Feature: domain Description: DEXSc_Pif1 _like Location: 701 0-7532 bp Feature: domain Description: KOG0987 Location: 8027-8099 bp Feature: domain Description: KOG0987 Location: 8027-8099 bp Feature: domain Description: HRDC Location: 8831-9050 bp Feature: domain Description: HRDC Location: 8831 -9050 bp Feature: domain Description: HTH_40 Location: 9116-9377 bp Feature: domain Description: HTH_40 Location: 91 1 6-9377 bp Feature: gene Location: 9454-10596 bp Ori: AUC80605.1 Feature: domain Description: SCAD_SBCAD Location: 9475-10585 bp Feature: domain Description: SCAD_SBCAD Location: 9475-1 0585 bp Feature: gene Location: 1451317-1451616 bp Feature: gene Location: 1451623-1452126 bp Feature: gene Location: 1452161-1453861 bp Ori: AUC81794.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 1452374-1452968 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 452374-1 452968 bp Feature: gene Location: 1453858-1454730 bp Feature: gene Location: 1454838-1455158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), SWIM (pfam04434), RVT-Retrons, DEXSc_Pif1_like (cd18037), KOG0987 (KOG0987, DNA helicase PIF1/RRM3 ), HRDC (smart00341), HTH_40 (pfam14493), SCAD_SBCAD (cd01158), RVT-UG10/RVT-UG17/RVT-UG19/RVT-UG25(RVT-UNC)