myRT

myRT report for GCA_002843285.1_ASM284328v1

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Seq: CP025229.1 Pseudomonas sp. AK6U chromosome, complete genome (6909530 bp)
Overview 1 RT 1: 3872465-3878105 bp 2 RT 2: 4348965-4357820 bp 3 RT 3: 4374088-4384383 bp Neighborhood of RT #1 [3872465, 3878188] RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #2 [4348965, 4357828] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #3 [4374088, 4384394] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 3872465-3872725 bp Feature: gene Location: 3873809-3873988 bp Feature: gene Location: 3874720-3875988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874933-3875590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874933-3875590 bp Feature: domain Description: GIIM Note: maturase Location: 3875668-3875890 bp Feature: domain Description: GIIM Note: maturase Location: 3875668-3875890 bp Feature: gene Location: 3876377-3877018 bp Feature: domain Description: DUF772 Location: 3876527-3876722 bp Feature: domain Description: DUF772 Location: 3876527-3876722 bp Feature: gene Location: 3877361-3878188 bp Feature: domain Description: ABC_phnC Location: 3877391-3878105 bp Feature: domain Description: ABC_phnC Location: 3877391 -38781 05 bp Feature: gene Location: 4348965-4349639 bp Feature: domain Description: NTP_transferase_like_1 Location: 4348971-4349610 bp Feature: domain Description: NTP_transferase_like_1 Location: 4348971 -434961 0 bp Feature: gene Location: 4349636-4350583 bp Feature: domain Description: COG3178 Location: 4349663-4350569 bp Feature: domain Description: COG31 78 Location: 4349663-4350569 bp Feature: gene Location: 4351922-4353634 bp Feature: domain Description: RVT_N Location: 4351979-4352222 bp Feature: domain Description: RVT_N Location: 4351 979-4352222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4352267-4352903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4352267-4352903 bp Feature: domain Description: YkfC Location: 4353113-4353263 bp Feature: domain Description: YkfC Location: 43531 1 3-4353263 bp Feature: domain Description: HNH Note: nucleases Location: 4353440-4353578 bp Feature: domain Description: HNH Note: nucleases Location: 4353440-4353578 bp Feature: gene Location: 4353766-4356555 bp Feature: domain Description: LptD Location: 4353961-4356541 bp Feature: domain Description: LptD Location: 4353961 -4356541 bp Feature: gene Location: 4356614-4357828 bp Feature: domain Description: PRK10770 Location: 4356626-4357820 bp Feature: domain Description: PRK1 0770 Location: 4356626-4357820 bp Feature: gene Location: 4374088-4375941 bp Feature: domain Description: PRK05658 Location: 4374100-4375939 bp Feature: domain Description: PRK05658 Location: 43741 00-4375939 bp Feature: gene Location: 4376048-4379785 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4376156-4376813 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 43761 56-437681 3 bp Feature: domain Description: PRK09776 Location: 4377026-4377497 bp Feature: domain Description: PRK09776 Location: 4377026-4377497 bp Feature: domain Description: PAS Location: 4377587-4378079 bp Feature: domain Description: PAS Location: 4377587-4378079 bp Feature: domain Description: PRK10060 Location: 4378088-4379735 bp Feature: domain Description: PRK1 0060 Location: 4378088-4379735 bp Feature: gene Location: 4380865-4382550 bp Feature: domain Description: RVT_N Location: 4380922-4381162 bp Feature: domain Description: RVT_N Location: 4380922-4381 1 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381210-4381846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381 21 0-4381 846 bp Feature: domain Description: GIIM Note: maturase Location: 4381900-4382131 bp Feature: domain Description: GIIM Note: maturase Location: 4381 900-43821 31 bp Feature: domain Description: HNH Note: nucleases Location: 4382383-4382521 bp Feature: domain Description: HNH Note: nucleases Location: 4382383-4382521 bp Feature: gene Location: 4382877-4383014 bp Feature: gene Location: 4383273-4384394 bp Feature: domain Description: COG3177 Location: 4383291-4384383 bp Feature: domain Description: COG31 77 Location: 4383291 -4384383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315), NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), YkfC (COG3344), HNH (pfam01844), LptD (COG1452)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), COG3177 (Fic family protein )