myRT

myRT report for GCA_002844395.1_ASM284439v1

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Seq: CP025197.1 Herbivorax saccincola strain GGR1 chromosome, complete genome (3604547 bp)
Overview 1 RT 1: 404724-423874 bp 2 RT 2: 789309-796092 bp 3 RT 3: 1336298-1339661 bp 4 RT 4: 3327356-3330716 bp Neighborhood of RT #1 [404724, 423891] VWA Big_2 YjdB Big_2 Cadherin-like SLH SLH SLH RVT-GII GIIM UPF0236 Peptidases_S8_Subtilisin_like Type_I_cohesin_like Dockerin_I Kelch Kelch Kelch SH3_3 RhsA RHS_repeat RHS_repeat YD_repeat_2x RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core DUF3289 Neighborhood of RT #2 [789309, 796121] PG_binding_1 PG_binding_1 SLT RVT-GII Fer4 Fer4 Neighborhood of RT #3 [1336298, 1339661] RVT-GII Neighborhood of RT #4 [3327356, 3330716] RVT-GII Feature: gene Location: 404724-405572 bp Feature: gene Location: 405602-408235 bp Ori: AUG56350.1 Gene: xynA3 Feature: domain Description: VWA Location: 405719-406181 bp Feature: domain Description: VWA Location: 40571 9-4061 81 bp Feature: domain Description: Big_2 Location: 406685-406802 bp Feature: domain Description: Big_2 Location: 406685-406802 bp Feature: domain Description: YjdB Location: 406979-407087 bp Feature: domain Description: YjdB Location: 406979-407087 bp Feature: domain Description: Big_2 Location: 407096-407330 bp Feature: domain Description: Big_2 Location: 407096-407330 bp Feature: domain Description: Cadherin-like Location: 407420-407645 bp Feature: domain Description: Cadherin-like Location: 407420-407645 bp Feature: domain Description: SLH Location: 407714-407837 bp Feature: domain Description: SLH Location: 40771 4-407837 bp Feature: domain Description: SLH Location: 407894-408020 bp Feature: domain Description: SLH Location: 407894-408020 bp Feature: domain Description: SLH Location: 408074-408206 bp Feature: domain Description: SLH Location: 408074-408206 bp Feature: gene Location: 408606-409898 bp Ori: AUG56351.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408960-409575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408960-409575 bp Feature: domain Description: GIIM Note: maturase Location: 409632-409860 bp Feature: domain Description: GIIM Note: maturase Location: 409632-409860 bp Feature: gene Location: 410393-411868 bp Ori: AUG56352.1 Feature: domain Description: UPF0236 Location: 410417-411647 bp Feature: domain Description: UPF0236 Location: 41 041 7-41 1 647 bp Feature: gene Location: 412933-423891 bp Ori: AUG56353.1 Gene: wapA2 Feature: domain Description: Peptidases_S8_Subtilisin_like Location: 413065-413821 bp Feature: domain Description: Peptidases_S8_Subtilisin_like Location: 41 3065-41 3821 bp Feature: domain Description: Type_I_cohesin_like Location: 413953-414358 bp Feature: domain Description: Type_I_cohesin_like Location: 41 3953-41 4358 bp Feature: domain Description: Dockerin_I Location: 414454-414625 bp Feature: domain Description: Dockerin_I Location: 41 4454-41 4625 bp Feature: domain Description: Kelch Location: 415525-415852 bp Feature: domain Description: Kelch Location: 41 5525-41 5852 bp Feature: domain Description: Kelch Location: 415891-416281 bp Feature: domain Description: Kelch Location: 41 5891 -41 6281 bp Feature: domain Description: Kelch Location: 416350-416434 bp Feature: domain Description: Kelch Location: 41 6350-41 6434 bp Feature: domain Description: SH3_3 Location: 416713-416884 bp Feature: domain Description: SH3_3 Location: 41 671 3-41 6884 bp Feature: domain Description: RhsA Location: 417130-417373 bp Feature: domain Description: RhsA Location: 41 71 30-41 7373 bp Feature: domain Description: RHS_repeat Location: 418231-418327 bp Feature: domain Description: RHS_repeat Location: 41 8231 -41 8327 bp Feature: domain Description: RHS_repeat Location: 418552-418648 bp Feature: domain Description: RHS_repeat Location: 41 8552-41 8648 bp Feature: domain Description: YD_repeat_2x Location: 418924-419023 bp Feature: domain Description: YD_repeat_2x Location: 41 8924-41 9023 bp Feature: domain Description: RHS_repeat Location: 420106-420229 bp Feature: domain Description: RHS_repeat Location: 4201 06-420229 bp Feature: domain Description: RHS_repeat Location: 420385-420484 bp Feature: domain Description: RHS_repeat Location: 420385-420484 bp Feature: domain Description: RHS_repeat Location: 420979-421078 bp Feature: domain Description: RHS_repeat Location: 420979-421 078 bp Feature: domain Description: RHS_repeat Location: 421501-421615 bp Feature: domain Description: RHS_repeat Location: 421 501 -421 61 5 bp Feature: domain Description: RHS_repeat Location: 422140-422254 bp Feature: domain Description: RHS_repeat Location: 4221 40-422254 bp Feature: domain Description: RHS_repeat Location: 422338-422464 bp Feature: domain Description: RHS_repeat Location: 422338-422464 bp Feature: domain Description: Rhs_assc_core Location: 422719-422959 bp Feature: domain Description: Rhs_assc_core Location: 42271 9-422959 bp Feature: domain Description: DUF3289 Location: 423274-423874 bp Feature: domain Description: DUF3289 Location: 423274-423874 bp Feature: gene Location: 789309-791657 bp Ori: AUG56675.1 Feature: domain Description: PG_binding_1 Location: 789879-790047 bp Feature: domain Description: PG_binding_1 Location: 789879-790047 bp Feature: domain Description: PG_binding_1 Location: 790167-790338 bp Feature: domain Description: PG_binding_1 Location: 7901 67-790338 bp Feature: domain Description: SLT Location: 790488-790743 bp Feature: domain Description: SLT Location: 790488-790743 bp Feature: gene Location: 791693-792742 bp Feature: gene Location: 793677-794207 bp Ori: AUG56677.1 Gene: ltrA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793698-794043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793698-794043 bp Feature: gene Location: 794374-794529 bp Feature: gene Location: 795924-796121 bp Ori: AUG56679.1 Gene: porD2 Feature: domain Description: Fer4 Location: 795939-796005 bp Feature: domain Description: Fer4 Location: 795939-796005 bp Feature: domain Description: Fer4 Location: 796029-796092 bp Feature: domain Description: Fer4 Location: 796029-796092 bp Feature: gene Location: 1336298-1336651 bp Feature: gene Location: 1336654-1336830 bp Feature: gene Location: 1337608-1337919 bp Ori: AUG57135.1 Gene: ltrA3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1337617-1337914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33761 7-1 33791 4 bp Feature: gene Location: 1338628-1338975 bp Feature: gene Location: 1338975-1339661 bp Feature: gene Location: 3327356-3328042 bp Feature: gene Location: 3328042-3328389 bp Feature: gene Location: 3329098-3329409 bp Ori: AUG58869.1 Gene: ltrA4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3329107-3329404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33291 07-3329404 bp Feature: gene Location: 3330220-3330360 bp Feature: gene Location: 3330363-3330716 bp Sorry, your browser does not support inline 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Associated domains:myRT VWA (smart00327), Big_2 (pfam02368), YjdB (COG5492), Cadherin-like (pfam12733), SLH (pfam00395), RVT-GII, GIIM (pfam08388), UPF0236 (pfam06782), Peptidases_S8_Subtilisin_like (cd07473), Type_I_cohesin_like (cd08548)
Dockerin_I (cd14256), Kelch (smart00612), SH3_3 (pfam08239), RhsA (COG3209), RHS_repeat (pfam05593), YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696), DUF3289 (pfam11692), PG_binding_1 (pfam01471), SLT (pfam01464)
Fer4 (pfam00037)