myRT

myRT report for GCA_002847015.1_ASM284701v1

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Seq: CP025085.1 Serratia sp. ATCC 39006 chromosome, complete genome (4971756 bp)
Overview 1 RT 1: 1252937-1259827 bp 2 RT 2: 1500268-1508056 bp 3 RT 3: 1719222-1723184 bp 4 RT 4: 4623354-4630576 bp Neighborhood of RT #1 [1252937, 1259829] mogA MFS_SV2_like RVT-GII GIIM PRK10659 dnaK Neighborhood of RT #2 [1500268, 1508067] PRK10225 PRK10727 RVT-GII GIIM PRK08043 PRK11195 Neighborhood of RT #3 [1719222, 1723184] COG3547 HTH_Tnp_1 RVT-Retrons Neighborhood of RT #4 [4623354, 4630725] PRK09692 RVT-Retrons HNH_2 Feature: gene Location: 1252937-1253524 bp Ori: AUG99374.1 Feature: domain Description: mogA Location: 1252940-1253513 bp Feature: domain Description: mogA Location: 1 252940-1 25351 3 bp Feature: gene Location: 1253652-1254980 bp Ori: AUG99375.1 Feature: domain Description: MFS_SV2_like Location: 1253709-1254897 bp Feature: domain Description: MFS_SV2_like Location: 1 253709-1 254897 bp Feature: gene Location: 1255485-1256873 bp Ori: AUG99376.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255815-1256433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25581 5-1 256433 bp Feature: domain Description: GIIM Note: maturase Location: 1256484-1256703 bp Feature: domain Description: GIIM Note: maturase Location: 1 256484-1 256703 bp Feature: gene Location: 1256963-1257544 bp Ori: AUG99377.1 Feature: domain Description: PRK10659 Location: 1256966-1257521 bp Feature: domain Description: PRK1 0659 Location: 1 256966-1 257521 bp Feature: gene Location: 1257907-1259829 bp Ori: AUG99378.1 Feature: domain Description: dnaK Location: 1257910-1259827 bp Feature: domain Description: dnaK Location: 1 25791 0-1 259827 bp Feature: gene Location: 1500268-1501035 bp Ori: AUG99569.1 Feature: domain Description: PRK10225 Location: 1500295-1501015 bp Feature: domain Description: PRK1 0225 Location: 1 500295-1 501 01 5 bp Feature: gene Location: 1501111-1502136 bp Ori: AUG99570.1 Feature: domain Description: PRK10727 Location: 1501114-1502116 bp Feature: domain Description: PRK1 0727 Location: 1 501 1 1 4-1 5021 1 6 bp Feature: gene Location: 1502976-1504364 bp Ori: AUG99571.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1503306-1503924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 503306-1 503924 bp Feature: domain Description: GIIM Note: maturase Location: 1503975-1504179 bp Feature: domain Description: GIIM Note: maturase Location: 1 503975-1 5041 79 bp Feature: gene Location: 1504700-1506862 bp Ori: AUG99572.1 Feature: domain Description: PRK08043 Location: 1504703-1506857 bp Feature: domain Description: PRK08043 Location: 1 504703-1 506857 bp Feature: gene Location: 1506859-1508067 bp Ori: AUG99573.1 Feature: domain Description: PRK11195 Location: 1506898-1508056 bp Feature: domain Description: PRK1 1 1 95 Location: 1 506898-1 508056 bp Feature: gene Location: 1719222-1720046 bp Feature: domain Description: COG3547 Location: 1719228-1720008 bp Feature: domain Description: COG3547 Location: 1 71 9228-1 720008 bp Feature: gene Location: 1720265-1720381 bp Feature: domain Description: HTH_Tnp_1 Location: 1720271-1720382 bp Feature: domain Description: HTH_Tnp_1 Location: 1 720271 -1 720382 bp Feature: gene Location: 1720550-1721503 bp Ori: AUG99764.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1720652-1721240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 720652-1 721 240 bp Feature: gene Location: 1721516-1722487 bp Feature: gene Location: 1722808-1723184 bp Feature: gene Location: 4623354-4624583 bp Ori: AUH02066.1 Feature: domain Description: PRK09692 Location: 4623357-4624563 bp Feature: domain Description: PRK09692 Location: 4623357-4624563 bp Feature: gene Location: 4624663-4625763 bp Feature: gene Location: 4625921-4627642 bp Ori: AUH02068.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4626059-4626683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4626059-4626683 bp Feature: gene Location: 4628311-4629623 bp Feature: gene Location: 4629790-4630725 bp Ori: AUH02069.1 Feature: domain Description: HNH_2 Location: 4630438-4630576 bp Feature: domain Description: HNH_2 Location: 4630438-4630576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mogA (PRK09417), MFS_SV2_like (cd17316), RVT-GII, GIIM (pfam08388), PRK10659 (acetate uptake transporter), dnaK (PRK00290), PRK10225 (Uxu operon transcriptional regulator), PRK10727 (HTH-type transcriptional regulator GalR), PRK08043 (bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase), PRK11195 (lysophospholipid transporter LplT; Provisional)
COG3547 (Transposase ), HTH_Tnp_1 (pfam01527), RVT-Retrons, PRK09692 (Integrase; provisional), HNH_2 (pfam13391)