myRT

myRT report for GCA_002848565.1_ASM284856v1

Download annotations/find similar RTs

Seq: CP025467.1 Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence (246557 bp)
Overview 1 RT 1: 150310-154291 bp Neighborhood of RT #1 [150310, 154404] INT_P4_C RVT-GII Microcin Feature: gene Location: 150310-150690 bp Feature: gene Location: 150685-151785 bp Ori: AUH88369.1 Feature: domain Description: INT_P4_C Location: 151144-151690 bp Feature: domain Description: INT_P4_C Location: 1 51 1 44-1 51 690 bp Feature: gene Location: 151872-153356 bp Ori: AUH88370.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152274-152964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52274-1 52964 bp Feature: gene Location: 153356-153607 bp Feature: gene Location: 154045-154404 bp Ori: AUH88372.1 Feature: domain Description: Microcin Location: 154192-154291 bp Feature: domain Description: Microcin Location: 1 541 92-1 54291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-GII, Microcin (pfam03526)

Seq: CP025468.1 Klebsiella pneumoniae strain JS187 plasmid p187-2, complete sequence (129684 bp)
Overview 1 RT 1: 90398-94600 bp Neighborhood of RT #1 [90398, 94617] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 90398-91069 bp Ori: AUH88559.1 Feature: domain Description: Plasmid_stab_B Location: 90413-90620 bp Feature: domain Description: Plasmid_stab_B Location: 90413-9062 0 bp Feature: domain Description: Plasmid_stab_B Location: 90725-90932 bp Feature: domain Description: Plasmid_stab_B Location: 9072 5-90932 bp Feature: gene Location: 91072-92043 bp Ori: AUH88560.1 Feature: domain Description: StbA Location: 91075-92020 bp Feature: domain Description: StbA Location: 91075-92 02 0 bp Feature: gene Location: 92292-93776 bp Ori: AUH88561.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92694-93384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 694-93384 bp Feature: gene Location: 93776-94027 bp Feature: gene Location: 94186-94617 bp Ori: AUH88563.1 Feature: domain Description: PRK10276 Location: 94237-94600 bp Feature: domain Description: PRK102 76 Location: 942 37-94600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP025466.1 Klebsiella pneumoniae strain JS187 chromosome, complete genome (5359967 bp)
Overview 1 RT 1: 1812454-1816624 bp 2 RT 2: 3519165-3527000 bp 3 RT 3: 3551913-3556794 bp 4 RT 4: 4081916-4086624 bp Neighborhood of RT #1 [1812454, 1816629] YbjK int RVT-GII DinI Neighborhood of RT #2 [3519165, 3527071] AAA_15 RVT-Retrons a_cpa1 TetR_N TetR_C_13 Neighborhood of RT #3 [3551913, 3556799] YccC PRK10016 RVT-GII dacD Neighborhood of RT #4 [4081916, 4086624] DUF3850 Phage_GPA RVT-GII Feature: gene Location: 1812454-1813017 bp Ori: AUH84707.1 Feature: domain Description: YbjK Location: 1812460-1812997 bp Feature: domain Description: YbjK Location: 1812460-1812997 bp Feature: gene Location: 1813140-1814192 bp Ori: AUH84708.1 Feature: domain Description: int Location: 1813143-1814142 bp Feature: domain Description: int Location: 1813 143 -1814142 bp Feature: gene Location: 1814306-1816096 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1815014-1815704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1815014-1815704 bp Feature: gene Location: 1816197-1816385 bp Feature: gene Location: 1816324-1816629 bp Ori: AUH84709.1 Feature: domain Description: DinI Location: 1816438-1816624 bp Feature: domain Description: DinI Location: 181643 8-1816624 bp Feature: gene Location: 3519165-3519395 bp Feature: gene Location: 3520278-3522554 bp Ori: AUH86301.1 Feature: domain Description: AAA_15 Location: 3520311-3521319 bp Feature: domain Description: AAA_15 Location: 3 5203 11-3 5213 19 bp Feature: gene Location: 3522669-3523769 bp Ori: AUH86302.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3522852-3523380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 522852-3 523 3 80 bp Feature: gene Location: 3524141-3525775 bp Ori: AUH86303.1 Feature: domain Description: a_cpa1 Location: 3524168-3525770 bp Feature: domain Description: a_cpa1 Location: 3 524168-3 525770 bp Feature: gene Location: 3526367-3527071 bp Ori: AUH86304.1 Feature: domain Description: TetR_N Location: 3526460-3526583 bp Feature: domain Description: TetR_N Location: 3 526460-3 526583 bp Feature: domain Description: TetR_C_13 Location: 3526661-3527000 bp Feature: domain Description: TetR_C_13 Location: 3 526661-3 527000 bp Feature: gene Location: 3551913-3552971 bp Ori: AUH86330.1 Feature: domain Description: YccC Location: 3551919-3552957 bp Feature: domain Description: YccC Location: 3 551919-3 552957 bp Feature: gene Location: 3553070-3553543 bp Ori: AUH86331.1 Feature: domain Description: PRK10016 Location: 3553073-3553532 bp Feature: domain Description: PRK10016 Location: 3 553 073 -3 553 53 2 bp Feature: gene Location: 3553625-3555109 bp Ori: AUH86332.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3554027-3554717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 554027-3 554717 bp Feature: gene Location: 3555109-3555360 bp Feature: gene Location: 3555630-3556799 bp Ori: AUH86334.1 Feature: domain Description: dacD Location: 3555639-3556794 bp Feature: domain Description: dacD Location: 3 55563 9-3 556794 bp Feature: gene Location: 4081916-4082197 bp Ori: AUH86771.1 Feature: domain Description: DUF3850 Location: 4081928-4082165 bp Feature: domain Description: DUF3 850 Location: 4081928-4082165 bp Feature: gene Location: 4082188-4084404 bp Ori: AUH86772.1 Feature: domain Description: Phage_GPA Location: 4082611-4083553 bp Feature: domain Description: Phage_GPA Location: 4082611-4083 553 bp Feature: gene Location: 4084551-4086035 bp Ori: AUH86773.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084953-4085643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084953 -4085643 bp Feature: gene Location: 4086035-4086286 bp Feature: gene Location: 4086442-4086624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, DinI (pfam06183), AAA_15 (pfam13175), RVT-Retrons, a_cpa1 (TIGR00831), TetR_N (pfam00440), TetR_C_13 (pfam16925), YccC (COG1289)
PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), DUF3850 (pfam12961), Phage_GPA (pfam05840)