myRT

myRT report for GCA_002848585.1_ASM284858v1

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Seq: CP025462.1 Klebsiella pneumoniae strain F44 plasmid p44-1, complete sequence (261706 bp)
Overview 1 RT 1: 39913-43921 bp 2 RT 2: 158697-162174 bp 3 RT 3: 247242-251736 bp Neighborhood of RT #1 [39913, 43977] PRK10276 RVT-GII cas7_csf2 Neighborhood of RT #2 [158697, 162174] INT_Cre_C RVT-GII Neighborhood of RT #3 [247242, 251736] HTH_28 rve RVT-GII Feature: gene Location: 39913-40335 bp Ori: AUH94037.1 Feature: domain Description: PRK10276 Location: 39919-40321 bp Feature: domain Description: PRK1 0276 Location: 3991 9-40321 bp Feature: gene Location: 40326-40505 bp Feature: gene Location: 40421-41905 bp Ori: AUH94039.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40823-41513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40823-41 51 3 bp Feature: gene Location: 41905-42156 bp Feature: gene Location: 43186-43977 bp Ori: AUH94041.1 Feature: domain Description: cas7_csf2 Location: 43507-43921 bp Feature: domain Description: cas7_csf2 Location: 43507-43921 bp Feature: gene Location: 158697-159014 bp Feature: gene Location: 159080-160216 bp Ori: AUH94156.1 Feature: domain Description: INT_Cre_C Location: 159503-160157 bp Feature: domain Description: INT_Cre_C Location: 1 59503-1 601 57 bp Feature: gene Location: 160302-161378 bp Ori: AUH94157.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160320-160986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 60320-1 60986 bp Feature: gene Location: 161443-161628 bp Feature: gene Location: 161920-162174 bp Feature: gene Location: 247242-247874 bp Feature: gene Location: 247903-249306 bp Ori: AUH94240.1 Feature: domain Description: HTH_28 Location: 247951-248092 bp Feature: domain Description: HTH_28 Location: 247951 -248092 bp Feature: domain Description: rve Location: 248332-248698 bp Feature: domain Description: rve Location: 248332-248698 bp Feature: gene Location: 249499-250983 bp Ori: AUH94241.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249901-250591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249901 -250591 bp Feature: gene Location: 251116-251355 bp Feature: gene Location: 251422-251736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, cas7_csf2 (TIGR03115), INT_Cre_C (cd00799), HTH_28 (pfam13518), rve (pfam00665)

Seq: CP025461.1 Klebsiella pneumoniae strain F44 chromosome, complete genome (5460465 bp)
Overview 1 RT 1: 1761438-1766300 bp 2 RT 2: 1769127-1774032 bp 3 RT 3: 2089005-2093305 bp 4 RT 4: 2161990-2166097 bp 5 RT 5: 3570226-3575958 bp 6 RT 6: 3592215-3597111 bp 7 RT 7: 4048664-4051440 bp 8 RT 8: 4210586-4214620 bp Neighborhood of RT #1 [1761438, 1766326] int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1769127, 1774037] Phage_GPA RVT-GII DinI Neighborhood of RT #3 [2089005, 2093305] PRK05318 RVT-GII PRK10597 Neighborhood of RT #4 [2161990, 2166099] DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [3570226, 3576488] AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #6 [3592215, 3597116] YccC PRK10016 RVT-GII dacD Neighborhood of RT #7 [4048664, 4051440] RVT-GII Neighborhood of RT #8 [4210586, 4215474] DinI RVT-GII Phage_GPA Feature: gene Location: 1761438-1762490 bp Ori: AUH90299.1 Feature: domain Description: int Location: 1761441-1762440 bp Feature: domain Description: int Location: 1761441-1762 440 bp Feature: gene Location: 1762658-1762909 bp Feature: gene Location: 1762909-1764393 bp Ori: AUH90301.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763311-1764001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763311-1764001 bp Feature: gene Location: 1764492-1765436 bp Feature: gene Location: 1765448-1766326 bp Ori: AUH90303.1 Feature: domain Description: Phage_CI_repr Location: 1765475-1765658 bp Feature: domain Description: Phage_CI_repr Location: 1765475-1765658 bp Feature: domain Description: Phage_CI_repr Location: 1765787-1765979 bp Feature: domain Description: Phage_CI_repr Location: 1765787-1765979 bp Feature: domain Description: Phage_CI_C Location: 1766006-1766300 bp Feature: domain Description: Phage_CI_C Location: 1766006-1766300 bp Feature: gene Location: 1769127-1771541 bp Ori: AUH90310.1 Feature: domain Description: Phage_GPA Location: 1769691-1770657 bp Feature: domain Description: Phage_GPA Location: 1769691-1770657 bp Feature: gene Location: 1771769-1772020 bp Feature: gene Location: 1772020-1773504 bp Ori: AUH90312.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772422-1773112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772 42 2 -1773112 bp Feature: gene Location: 1773605-1773793 bp Feature: gene Location: 1773732-1774037 bp Ori: AUH90313.1 Feature: domain Description: DinI Location: 1773846-1774032 bp Feature: domain Description: DinI Location: 1773846-1774032 bp Feature: gene Location: 2089005-2090366 bp Ori: AUH90597.1 Feature: domain Description: PRK05318 Location: 2089029-2090328 bp Feature: domain Description: PRK05318 Location: 2 08902 9-2 09032 8 bp Feature: gene Location: 2090956-2091207 bp Feature: gene Location: 2091207-2092691 bp Ori: AUH90599.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2091609-2092299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 091609-2 092 2 99 bp Feature: gene Location: 2092770-2093003 bp Ori: AUH90600.1 Feature: domain Description: PRK10597 Location: 2092773-2092998 bp Feature: domain Description: PRK10597 Location: 2 092 773-2 092 998 bp Feature: gene Location: 2093015-2093305 bp Feature: gene Location: 2161990-2162232 bp Ori: AUH90672.1 Feature: domain Description: DinI Location: 2162041-2162221 bp Feature: domain Description: DinI Location: 2 162 041-2 162 2 2 1 bp Feature: gene Location: 2162599-2162850 bp Feature: gene Location: 2162850-2164333 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2163252-2163378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1632 52 -2 163378 bp Feature: gene Location: 2164412-2164831 bp Ori: AUH90674.1 Feature: domain Description: PRK10276 Location: 2164415-2164826 bp Feature: domain Description: PRK102 76 Location: 2 164415-2 16482 6 bp Feature: gene Location: 2164834-2166099 bp Ori: AUH90675.1 Feature: domain Description: umuC Location: 2164837-2166097 bp Feature: domain Description: umuC Location: 2 164837-2 166097 bp Feature: gene Location: 3570226-3570456 bp Feature: gene Location: 3571335-3573611 bp Ori: AUH92019.1 Feature: domain Description: AAA_15 Location: 3571368-3572376 bp Feature: domain Description: AAA_15 Location: 3571368-3572 376 bp Feature: gene Location: 3573726-3574826 bp Ori: AUH92020.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3573909-3574437 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3573909-3574437 bp Feature: gene Location: 3575073-3575315 bp Feature: gene Location: 3575385-3576488 bp Ori: AUH92021.1 Feature: domain Description: STKc_PknB_like Location: 3575517-3575958 bp Feature: domain Description: STKc_PknB_like Location: 3575517-3575958 bp Feature: gene Location: 3592215-3593273 bp Ori: AUH92039.1 Feature: domain Description: YccC Location: 3592221-3593259 bp Feature: domain Description: YccC Location: 3592 2 2 1-35932 59 bp Feature: gene Location: 3593372-3593845 bp Ori: AUH92040.1 Feature: domain Description: PRK10016 Location: 3593375-3593834 bp Feature: domain Description: PRK10016 Location: 3593375-3593834 bp Feature: gene Location: 3593927-3595426 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3594329-3594734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359432 9-3594734 bp Feature: gene Location: 3595426-3595677 bp Feature: gene Location: 3595947-3597116 bp Ori: AUH92042.1 Feature: domain Description: dacD Location: 3595956-3597111 bp Feature: domain Description: dacD Location: 3595956-3597111 bp Feature: gene Location: 4048664-4048921 bp Feature: gene Location: 4049074-4049325 bp Feature: gene Location: 4049325-4050809 bp Ori: AUH92420.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4049727-4050417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404972 7-4050417 bp Feature: gene Location: 4050906-4051244 bp Feature: gene Location: 4051237-4051440 bp Feature: gene Location: 4210586-4210819 bp Ori: AUH92578.1 Feature: domain Description: DinI Location: 4210631-4210814 bp Feature: domain Description: DinI Location: 42 10631-42 10814 bp Feature: gene Location: 4210831-4211019 bp Feature: gene Location: 4211127-4212609 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4211529-4212129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 1152 9-42 12 12 9 bp Feature: gene Location: 4212609-4212860 bp Feature: gene Location: 4213090-4215474 bp Ori: AUH92581.1 Feature: domain Description: Phage_GPA Location: 4213654-4214620 bp Feature: domain Description: Phage_GPA Location: 42 13654-42 1462 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), Phage_GPA (pfam05840), DinI (pfam06183), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)
AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397)

Seq: CP025463.1 Klebsiella pneumoniae strain F44 plasmid p44-2, complete sequence (161580 bp)
Overview 1 RT 1: 26738-30940 bp 2 RT 2: 96604-100700 bp Neighborhood of RT #1 [26738, 30957] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Neighborhood of RT #2 [96604, 100825] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 26738-27409 bp Ori: AUH94307.1 Feature: domain Description: Plasmid_stab_B Location: 26753-26960 bp Feature: domain Description: Plasmid_stab_B Location: 26753 -26960 bp Feature: domain Description: Plasmid_stab_B Location: 27065-27272 bp Feature: domain Description: Plasmid_stab_B Location: 27065-27272 bp Feature: gene Location: 27412-28383 bp Ori: AUH94308.1 Feature: domain Description: StbA Location: 27415-28360 bp Feature: domain Description: StbA Location: 27415-283 60 bp Feature: gene Location: 28632-30116 bp Ori: AUH94309.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29034-29724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903 4-29724 bp Feature: gene Location: 30116-30367 bp Feature: gene Location: 30526-30957 bp Ori: AUH94311.1 Feature: domain Description: PRK10276 Location: 30577-30940 bp Feature: domain Description: PRK10276 Location: 3 0577-3 0940 bp Feature: gene Location: 96604-96834 bp Feature: gene Location: 97097-97354 bp Feature: gene Location: 98234-99901 bp Ori: AUH94382.1 Gene: ltrA Feature: domain Description: RVT_N Location: 98282-98519 bp Feature: domain Description: RVT_N Location: 98282-98519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98570-99212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98570-99212 bp Feature: domain Description: GIIM Note: maturase Location: 99263-99497 bp Feature: domain Description: GIIM Note: maturase Location: 99263 -99497 bp Feature: domain Description: HNHc Note: nucleases Location: 99707-99866 bp Feature: domain Description: HNHc Note: nucleases Location: 99707-99866 bp Feature: gene Location: 100215-100406 bp Feature: gene Location: 100403-100825 bp Ori: AUH94384.1 Feature: domain Description: DUF1380 Location: 100406-100700 bp Feature: domain Description: DUF13 80 Location: 100406-100700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)