myRT

myRT report for GCA_002848625.1_ASM284862v1

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Seq: CP023780.1 Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate chromosome, complete genome (2863296 bp)
Overview 1 RT 1: 258308-275613 bp 2 RT 2: 421219-428050 bp 3 RT 3: 2689901-2709549 bp 4 RT 4: 2768651-2772955 bp Neighborhood of RT #1 [258308, 275613] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [421219, 428058] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2689901, 2709549] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2768651, 2772955] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 258308-258691 bp Ori: AUI14599.1 Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: gene Location: 258720-259865 bp Ori: AUI14600.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 259329-259845 bp Feature: domain Description: FtsK Location: 259329-259845 bp Feature: gene Location: 260580-262439 bp Ori: AUI14601.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261 630 bp Feature: domain Description: HNHc Note: nucleases Location: 262185-262323 bp Feature: domain Description: HNHc Note: nucleases Location: 2621 85-262323 bp Feature: gene Location: 262533-262817 bp Feature: gene Location: 262996-264201 bp Ori: AUI14603.1 Feature: domain Description: HTH_XRE Location: 263041-263185 bp Feature: domain Description: HTH_XRE Location: 263041 -2631 85 bp Feature: domain Description: Rol_Rep_N Location: 263212-263479 bp Feature: domain Description: Rol_Rep_N Location: 26321 2-263479 bp Feature: domain Description: Rep_trans Location: 263503-264112 bp Feature: domain Description: Rep_trans Location: 263503-2641 1 2 bp Feature: gene Location: 264985-266895 bp Ori: AUI14604.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265318-266056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26531 8-266056 bp Feature: domain Description: HNHc Note: nucleases Location: 266611-266776 bp Feature: domain Description: HNHc Note: nucleases Location: 26661 1 -266776 bp Feature: gene Location: 267340-267837 bp Ori: AUI14605.1 Feature: domain Description: ArdA Location: 267358-267823 bp Feature: domain Description: ArdA Location: 267358-267823 bp Feature: gene Location: 267924-268316 bp Ori: AUI14606.1 Feature: domain Description: TcpE Location: 267942-268242 bp Feature: domain Description: TcpE Location: 267942-268242 bp Feature: gene Location: 268300-269853 bp Ori: AUI14607.1 Feature: domain Description: AAA_10 Location: 269632-269818 bp Feature: domain Description: AAA_1 0 Location: 269632-26981 8 bp Feature: gene Location: 270550-272376 bp Ori: AUI14608.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271 549 bp Feature: gene Location: 272510-273427 bp Ori: AUI14609.1 Feature: domain Description: AAA_10 Location: 272513-273395 bp Feature: domain Description: AAA_1 0 Location: 27251 3-273395 bp Feature: gene Location: 273430-275613 bp Feature: gene Location: 421219-422100 bp Ori: AUI14743.1 Gene: ecsA_1 Feature: domain Description: CcmA Location: 421222-422092 bp Feature: domain Description: CcmA Location: 421 222-422092 bp Feature: gene Location: 422354-422953 bp Ori: AUI14744.1 Feature: domain Description: AcrR Location: 422372-422858 bp Feature: domain Description: AcrR Location: 422372-422858 bp Feature: gene Location: 423440-424828 bp Ori: AUI14745.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761-424376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761 -424376 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: gene Location: 424921-426222 bp Ori: AUI14746.1 Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: gene Location: 426802-428058 bp Ori: AUI14747.1 Gene: tyrS1 Feature: domain Description: PRK13354 Location: 426805-428050 bp Feature: domain Description: PRK1 3354 Location: 426805-428050 bp Feature: gene Location: 2689901-2690236 bp Ori: AUI16898.1 Feature: domain Description: RelB_DinJ Location: 2690105-2690228 bp Feature: domain Description: RelB_DinJ Location: 26901 05-2690228 bp Feature: gene Location: 2690319-2691464 bp Ori: AUI16899.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2690979-2691444 bp Feature: domain Description: FtsK Location: 2690979-2691 444 bp Feature: gene Location: 2692179-2694038 bp Ori: AUI16900.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692488-2693229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692488-2693229 bp Feature: domain Description: HNHc Note: nucleases Location: 2693784-2693922 bp Feature: domain Description: HNHc Note: nucleases Location: 2693784-2693922 bp Feature: gene Location: 2694132-2694371 bp Feature: gene Location: 2694449-2695123 bp Ori: AUI16902.1 Feature: domain Description: Zeta_toxin Location: 2694548-2695031 bp Feature: domain Description: Zeta_toxin Location: 2694548-2695031 bp Feature: gene Location: 2697037-2698221 bp Ori: AUI16905.1 Feature: domain Description: HTH_XRE Location: 2697067-2697211 bp Feature: domain Description: HTH_XRE Location: 2697067-269721 1 bp Feature: domain Description: Rol_Rep_N Location: 2697244-2697508 bp Feature: domain Description: Rol_Rep_N Location: 2697244-2697508 bp Feature: domain Description: Rep_trans Location: 2697532-2698144 bp Feature: domain Description: Rep_trans Location: 2697532-26981 44 bp Feature: gene Location: 2698218-2698355 bp Ori: AUI16906.1 Feature: domain Description: DUF3789 Location: 2698245-2698338 bp Feature: domain Description: DUF3789 Location: 2698245-2698338 bp Feature: gene Location: 2699101-2701014 bp Ori: AUI16907.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699434-2700175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699434-27001 75 bp Feature: domain Description: HNHc Note: nucleases Location: 2700730-2700895 bp Feature: domain Description: HNHc Note: nucleases Location: 2700730-2700895 bp Feature: gene Location: 2701355-2701858 bp Ori: AUI16908.1 Feature: domain Description: ArdA Location: 2701373-2701844 bp Feature: domain Description: ArdA Location: 2701 373-2701 844 bp Feature: gene Location: 2701918-2702307 bp Ori: AUI16909.1 Feature: domain Description: TcpE Location: 2701936-2702236 bp Feature: domain Description: TcpE Location: 2701 936-2702236 bp Feature: gene Location: 2702294-2703844 bp Ori: AUI16910.1 Feature: domain Description: AAA_10 Location: 2703623-2703806 bp Feature: domain Description: AAA_1 0 Location: 2703623-2703806 bp Feature: gene Location: 2704541-2706367 bp Ori: AUI16911.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2704841-2705540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2704841 -2705540 bp Feature: gene Location: 2706501-2707421 bp Ori: AUI16912.1 Feature: domain Description: AAA_10 Location: 2706504-2707386 bp Feature: domain Description: AAA_1 0 Location: 2706504-2707386 bp Feature: gene Location: 2707426-2709549 bp Feature: gene Location: 2768651-2769910 bp Ori: AUI16967.1 Feature: domain Description: PRK09290 Location: 2768657-2769902 bp Feature: domain Description: PRK09290 Location: 2768657-2769902 bp Feature: gene Location: 2770026-2770340 bp Ori: AUI16968.1 Feature: domain Description: AlbA_2 Location: 2770065-2770236 bp Feature: domain Description: AlbA_2 Location: 2770065-2770236 bp Feature: gene Location: 2770486-2772012 bp Ori: AUI16969.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2770924-2771380 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2770924-2771 380 bp Feature: gene Location: 2772160-2772639 bp Ori: AUI16970.1 Feature: domain Description: DUF3841 Location: 2772169-2772544 bp Feature: domain Description: DUF3841 Location: 27721 69-2772544 bp Feature: gene Location: 2772806-2772955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RelB_DinJ (TIGR02384), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326)
RVT-AbiP2, DUF3841 (pfam12952)