myRT

myRT report for GCA_002848645.1_ASM284864v1

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Seq: CP023784.1 Enterococcus faecium strain Efaecium_ER04120.3A chromosome, complete genome (2869275 bp)
Overview 1 RT 1: 259782-277087 bp 2 RT 2: 422693-429524 bp 3 RT 3: 2697212-2716860 bp 4 RT 4: 2774630-2778934 bp Neighborhood of RT #1 [259782, 277087] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [422693, 429532] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2697212, 2716860] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2774630, 2778934] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 259782-260165 bp Ori: AUI17523.1 Feature: domain Description: DUF961 Location: 259797-260097 bp Feature: domain Description: DUF961 Location: 259797-260097 bp Feature: gene Location: 260194-261339 bp Ori: AUI17524.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 260803-261319 bp Feature: domain Description: FtsK Location: 260803-261 31 9 bp Feature: gene Location: 262054-263913 bp Ori: AUI17525.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262363-263104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262363-2631 04 bp Feature: domain Description: HNHc Note: nucleases Location: 263659-263797 bp Feature: domain Description: HNHc Note: nucleases Location: 263659-263797 bp Feature: gene Location: 264007-264291 bp Feature: gene Location: 264470-265675 bp Ori: AUI17527.1 Feature: domain Description: HTH_XRE Location: 264515-264659 bp Feature: domain Description: HTH_XRE Location: 26451 5-264659 bp Feature: domain Description: Rol_Rep_N Location: 264686-264953 bp Feature: domain Description: Rol_Rep_N Location: 264686-264953 bp Feature: domain Description: Rep_trans Location: 264977-265586 bp Feature: domain Description: Rep_trans Location: 264977-265586 bp Feature: gene Location: 266459-268369 bp Ori: AUI17528.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266792-267530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266792-267530 bp Feature: domain Description: HNHc Note: nucleases Location: 268085-268250 bp Feature: domain Description: HNHc Note: nucleases Location: 268085-268250 bp Feature: gene Location: 268814-269311 bp Ori: AUI17529.1 Feature: domain Description: ArdA Location: 268832-269297 bp Feature: domain Description: ArdA Location: 268832-269297 bp Feature: gene Location: 269398-269790 bp Ori: AUI17530.1 Feature: domain Description: TcpE Location: 269416-269716 bp Feature: domain Description: TcpE Location: 26941 6-26971 6 bp Feature: gene Location: 269774-271327 bp Ori: AUI17531.1 Feature: domain Description: AAA_10 Location: 271106-271292 bp Feature: domain Description: AAA_1 0 Location: 271 1 06-271 292 bp Feature: gene Location: 272024-273850 bp Ori: AUI17532.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 272324-273023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 272324-273023 bp Feature: gene Location: 273984-274901 bp Ori: AUI17533.1 Feature: domain Description: AAA_10 Location: 273987-274869 bp Feature: domain Description: AAA_1 0 Location: 273987-274869 bp Feature: gene Location: 274904-277087 bp Feature: gene Location: 422693-423574 bp Ori: AUI17667.1 Gene: ecsA_1 Feature: domain Description: CcmA Location: 422696-423566 bp Feature: domain Description: CcmA Location: 422696-423566 bp Feature: gene Location: 423828-424427 bp Ori: AUI17668.1 Feature: domain Description: AcrR Location: 423846-424332 bp Feature: domain Description: AcrR Location: 423846-424332 bp Feature: gene Location: 424914-426302 bp Ori: AUI17669.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425235-425850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425235-425850 bp Feature: domain Description: GIIM Note: maturase Location: 425907-426123 bp Feature: domain Description: GIIM Note: maturase Location: 425907-4261 23 bp Feature: gene Location: 426395-427696 bp Ori: AUI17670.1 Feature: domain Description: CE4_DAC_u3_5s Location: 427064-427454 bp Feature: domain Description: CE4_DAC_u3_5s Location: 427064-427454 bp Feature: gene Location: 428276-429532 bp Ori: AUI17671.1 Gene: tyrS1 Feature: domain Description: PRK13354 Location: 428279-429524 bp Feature: domain Description: PRK1 3354 Location: 428279-429524 bp Feature: gene Location: 2697212-2697547 bp Ori: AUI19826.1 Feature: domain Description: RelB_DinJ Location: 2697416-2697539 bp Feature: domain Description: RelB_DinJ Location: 269741 6-2697539 bp Feature: gene Location: 2697630-2698775 bp Ori: AUI19827.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2698290-2698755 bp Feature: domain Description: FtsK Location: 2698290-2698755 bp Feature: gene Location: 2699490-2701349 bp Ori: AUI19828.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699799-2700540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699799-2700540 bp Feature: domain Description: HNHc Note: nucleases Location: 2701095-2701233 bp Feature: domain Description: HNHc Note: nucleases Location: 2701 095-2701 233 bp Feature: gene Location: 2701443-2701682 bp Feature: gene Location: 2701760-2702434 bp Ori: AUI19830.1 Feature: domain Description: Zeta_toxin Location: 2701859-2702342 bp Feature: domain Description: Zeta_toxin Location: 2701 859-2702342 bp Feature: gene Location: 2704348-2705532 bp Ori: AUI19833.1 Feature: domain Description: HTH_XRE Location: 2704378-2704522 bp Feature: domain Description: HTH_XRE Location: 2704378-2704522 bp Feature: domain Description: Rol_Rep_N Location: 2704555-2704819 bp Feature: domain Description: Rol_Rep_N Location: 2704555-270481 9 bp Feature: domain Description: Rep_trans Location: 2704843-2705455 bp Feature: domain Description: Rep_trans Location: 2704843-2705455 bp Feature: gene Location: 2705529-2705666 bp Ori: AUI19834.1 Feature: domain Description: DUF3789 Location: 2705556-2705649 bp Feature: domain Description: DUF3789 Location: 2705556-2705649 bp Feature: gene Location: 2706412-2708325 bp Ori: AUI19835.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706745-2707486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706745-2707486 bp Feature: domain Description: HNHc Note: nucleases Location: 2708041-2708206 bp Feature: domain Description: HNHc Note: nucleases Location: 2708041 -2708206 bp Feature: gene Location: 2708666-2709169 bp Ori: AUI19836.1 Feature: domain Description: ArdA Location: 2708684-2709155 bp Feature: domain Description: ArdA Location: 2708684-27091 55 bp Feature: gene Location: 2709229-2709618 bp Ori: AUI19837.1 Feature: domain Description: TcpE Location: 2709247-2709547 bp Feature: domain Description: TcpE Location: 2709247-2709547 bp Feature: gene Location: 2709605-2711155 bp Ori: AUI19838.1 Feature: domain Description: AAA_10 Location: 2710934-2711117 bp Feature: domain Description: AAA_1 0 Location: 271 0934-271 1 1 1 7 bp Feature: gene Location: 2711852-2713678 bp Ori: AUI19839.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2712152-2712851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 21 52-271 2851 bp Feature: gene Location: 2713812-2714732 bp Ori: AUI19840.1 Feature: domain Description: AAA_10 Location: 2713815-2714697 bp Feature: domain Description: AAA_1 0 Location: 271 381 5-271 4697 bp Feature: gene Location: 2714737-2716860 bp Feature: gene Location: 2774630-2775889 bp Ori: AUI19894.1 Feature: domain Description: PRK09290 Location: 2774636-2775881 bp Feature: domain Description: PRK09290 Location: 2774636-2775881 bp Feature: gene Location: 2776005-2776319 bp Ori: AUI19895.1 Feature: domain Description: AlbA_2 Location: 2776044-2776215 bp Feature: domain Description: AlbA_2 Location: 2776044-277621 5 bp Feature: gene Location: 2776465-2777991 bp Ori: AUI19896.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2776903-2777359 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2776903-2777359 bp Feature: gene Location: 2778139-2778618 bp Ori: AUI19897.1 Feature: domain Description: DUF3841 Location: 2778148-2778523 bp Feature: domain Description: DUF3841 Location: 27781 48-2778523 bp Feature: gene Location: 2778785-2778934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RelB_DinJ (TIGR02384), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326)
RVT-AbiP2, DUF3841 (pfam12952)

Seq: CP023786.1 Enterococcus faecium strain Efaecium_ER04120.3A plasmid pER04120.3A.2, complete sequence (40911 bp)
Overview 1 RT 1: 24039-30767 bp Neighborhood of RT #1 [24039, 30799] PinE Tra8 RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 24039-24602 bp Ori: AUI20205.1 Gene: hin_3 Feature: domain Description: PinE Location: 24051-24597 bp Feature: domain Description: PinE Location: 2 4051-2 4597 bp Feature: gene Location: 25245-26198 bp Ori: AUI20206.1 Feature: domain Description: Tra8 Location: 25248-26175 bp Feature: domain Description: Tra8 Location: 2 52 48-2 6175 bp Feature: gene Location: 26176-27651 bp Ori: AUI20207.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26524-26989 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 652 4-2 6989 bp Feature: gene Location: 27784-28956 bp Ori: AUI20208.1 Feature: domain Description: Transposase_mut Location: 27787-28924 bp Feature: domain Description: Transposase_mut Location: 2 7787-2 892 4 bp Feature: gene Location: 29321-30799 bp Ori: AUI20209.1 Feature: domain Description: HsdM Location: 29342-30767 bp Feature: domain Description: HsdM Location: 2 9342 -30767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)