myRT

myRT report for GCA_002848665.1_ASM284866v1

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Seq: CP023794.1 Enterococcus faecium strain Efaecium_ER04484.3A chromosome, complete genome (2869064 bp)
Overview 1 RT 1: 258308-275613 bp 2 RT 2: 421219-428050 bp 3 RT 3: 2695669-2715317 bp 4 RT 4: 2773087-2777391 bp Neighborhood of RT #1 [258308, 275613] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [421219, 428058] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2695669, 2715317] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2773087, 2777391] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 258308-258691 bp Ori: AUI23463.1 Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: gene Location: 258720-259865 bp Ori: AUI23464.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 259329-259845 bp Feature: domain Description: FtsK Location: 259329-259845 bp Feature: gene Location: 260580-262439 bp Ori: AUI23465.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261 630 bp Feature: domain Description: HNHc Note: nucleases Location: 262185-262323 bp Feature: domain Description: HNHc Note: nucleases Location: 2621 85-262323 bp Feature: gene Location: 262533-262817 bp Feature: gene Location: 262996-264201 bp Ori: AUI23467.1 Feature: domain Description: HTH_XRE Location: 263041-263185 bp Feature: domain Description: HTH_XRE Location: 263041 -2631 85 bp Feature: domain Description: Rol_Rep_N Location: 263212-263479 bp Feature: domain Description: Rol_Rep_N Location: 26321 2-263479 bp Feature: domain Description: Rep_trans Location: 263503-264112 bp Feature: domain Description: Rep_trans Location: 263503-2641 1 2 bp Feature: gene Location: 264985-266895 bp Ori: AUI23468.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265318-266056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26531 8-266056 bp Feature: domain Description: HNHc Note: nucleases Location: 266611-266776 bp Feature: domain Description: HNHc Note: nucleases Location: 26661 1 -266776 bp Feature: gene Location: 267340-267837 bp Ori: AUI23469.1 Feature: domain Description: ArdA Location: 267358-267823 bp Feature: domain Description: ArdA Location: 267358-267823 bp Feature: gene Location: 267924-268316 bp Ori: AUI23470.1 Feature: domain Description: TcpE Location: 267942-268242 bp Feature: domain Description: TcpE Location: 267942-268242 bp Feature: gene Location: 268300-269853 bp Ori: AUI23471.1 Feature: domain Description: AAA_10 Location: 269632-269818 bp Feature: domain Description: AAA_1 0 Location: 269632-26981 8 bp Feature: gene Location: 270550-272376 bp Ori: AUI23472.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271 549 bp Feature: gene Location: 272510-273427 bp Ori: AUI23473.1 Feature: domain Description: AAA_10 Location: 272513-273395 bp Feature: domain Description: AAA_1 0 Location: 27251 3-273395 bp Feature: gene Location: 273430-275613 bp Feature: gene Location: 421219-422100 bp Ori: AUI23607.1 Gene: ecsA_1 Feature: domain Description: CcmA Location: 421222-422092 bp Feature: domain Description: CcmA Location: 421 222-422092 bp Feature: gene Location: 422354-422953 bp Ori: AUI23608.1 Feature: domain Description: AcrR Location: 422372-422858 bp Feature: domain Description: AcrR Location: 422372-422858 bp Feature: gene Location: 423440-424828 bp Ori: AUI23609.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761-424376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761 -424376 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: gene Location: 424921-426222 bp Ori: AUI23610.1 Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: gene Location: 426802-428058 bp Ori: AUI23611.1 Gene: tyrS1 Feature: domain Description: PRK13354 Location: 426805-428050 bp Feature: domain Description: PRK1 3354 Location: 426805-428050 bp Feature: gene Location: 2695669-2696004 bp Ori: AUI25766.1 Feature: domain Description: RelB_DinJ Location: 2695873-2695996 bp Feature: domain Description: RelB_DinJ Location: 2695873-2695996 bp Feature: gene Location: 2696087-2697232 bp Ori: AUI25767.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2696747-2697212 bp Feature: domain Description: FtsK Location: 2696747-269721 2 bp Feature: gene Location: 2697947-2699806 bp Ori: AUI25768.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698256-2698997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698256-2698997 bp Feature: domain Description: HNHc Note: nucleases Location: 2699552-2699690 bp Feature: domain Description: HNHc Note: nucleases Location: 2699552-2699690 bp Feature: gene Location: 2699900-2700139 bp Feature: gene Location: 2700217-2700891 bp Ori: AUI25770.1 Feature: domain Description: Zeta_toxin Location: 2700316-2700799 bp Feature: domain Description: Zeta_toxin Location: 270031 6-2700799 bp Feature: gene Location: 2702805-2703989 bp Ori: AUI25773.1 Feature: domain Description: HTH_XRE Location: 2702835-2702979 bp Feature: domain Description: HTH_XRE Location: 2702835-2702979 bp Feature: domain Description: Rol_Rep_N Location: 2703012-2703276 bp Feature: domain Description: Rol_Rep_N Location: 270301 2-2703276 bp Feature: domain Description: Rep_trans Location: 2703300-2703912 bp Feature: domain Description: Rep_trans Location: 2703300-270391 2 bp Feature: gene Location: 2703986-2704123 bp Ori: AUI25774.1 Feature: domain Description: DUF3789 Location: 2704013-2704106 bp Feature: domain Description: DUF3789 Location: 270401 3-27041 06 bp Feature: gene Location: 2704869-2706782 bp Ori: AUI25775.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705202-2705943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705202-2705943 bp Feature: domain Description: HNHc Note: nucleases Location: 2706498-2706663 bp Feature: domain Description: HNHc Note: nucleases Location: 2706498-2706663 bp Feature: gene Location: 2707123-2707626 bp Ori: AUI25776.1 Feature: domain Description: ArdA Location: 2707141-2707612 bp Feature: domain Description: ArdA Location: 27071 41 -270761 2 bp Feature: gene Location: 2707686-2708075 bp Ori: AUI25777.1 Feature: domain Description: TcpE Location: 2707704-2708004 bp Feature: domain Description: TcpE Location: 2707704-2708004 bp Feature: gene Location: 2708062-2709612 bp Ori: AUI25778.1 Feature: domain Description: AAA_10 Location: 2709391-2709574 bp Feature: domain Description: AAA_1 0 Location: 2709391 -2709574 bp Feature: gene Location: 2710309-2712135 bp Ori: AUI25779.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2710609-2711308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 0609-271 1 308 bp Feature: gene Location: 2712269-2713189 bp Ori: AUI25780.1 Feature: domain Description: AAA_10 Location: 2712272-2713154 bp Feature: domain Description: AAA_1 0 Location: 271 2272-271 31 54 bp Feature: gene Location: 2713194-2715317 bp Feature: gene Location: 2773087-2774346 bp Ori: AUI25835.1 Feature: domain Description: PRK09290 Location: 2773093-2774338 bp Feature: domain Description: PRK09290 Location: 2773093-2774338 bp Feature: gene Location: 2774462-2774776 bp Ori: AUI25836.1 Feature: domain Description: AlbA_2 Location: 2774501-2774672 bp Feature: domain Description: AlbA_2 Location: 2774501 -2774672 bp Feature: gene Location: 2774922-2776448 bp Ori: AUI25837.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2775360-2775816 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2775360-277581 6 bp Feature: gene Location: 2776596-2777075 bp Ori: AUI25838.1 Feature: domain Description: DUF3841 Location: 2776605-2776980 bp Feature: domain Description: DUF3841 Location: 2776605-2776980 bp Feature: gene Location: 2777242-2777391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RelB_DinJ (TIGR02384), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326)
RVT-AbiP2, DUF3841 (pfam12952)

Seq: CP023796.1 Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.2, complete sequence (40911 bp)
Overview 1 RT 1: 24039-30767 bp Neighborhood of RT #1 [24039, 30799] PinE Tra8 RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 24039-24602 bp Ori: AUI26149.1 Gene: hin_3 Feature: domain Description: PinE Location: 24051-24597 bp Feature: domain Description: PinE Location: 2 4051-2 4597 bp Feature: gene Location: 25245-26198 bp Ori: AUI26150.1 Feature: domain Description: Tra8 Location: 25248-26175 bp Feature: domain Description: Tra8 Location: 2 52 48-2 6175 bp Feature: gene Location: 26176-27651 bp Ori: AUI26151.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26524-26989 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 652 4-2 6989 bp Feature: gene Location: 27784-28956 bp Ori: AUI26152.1 Feature: domain Description: Transposase_mut Location: 27787-28924 bp Feature: domain Description: Transposase_mut Location: 2 7787-2 892 4 bp Feature: gene Location: 29321-30799 bp Ori: AUI26153.1 Feature: domain Description: HsdM Location: 29342-30767 bp Feature: domain Description: HsdM Location: 2 9342 -30767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)