myRT

myRT report for GCA_002848685.1_ASM284868v1

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Seq: CP023791.1 Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.2, complete sequence (40911 bp)
Overview 1 RT 1: 24039-30767 bp Neighborhood of RT #1 [24039, 30799] PinE Tra8 RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 24039-24602 bp Ori: AUI23174.1 Gene: hin_3 Feature: domain Description: PinE Location: 24051-24597 bp Feature: domain Description: PinE Location: 24051 -24597 bp Feature: gene Location: 25245-26198 bp Ori: AUI23175.1 Feature: domain Description: Tra8 Location: 25248-26175 bp Feature: domain Description: Tra8 Location: 25248-261 75 bp Feature: gene Location: 26176-27651 bp Ori: AUI23176.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26524-26989 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26524-26989 bp Feature: gene Location: 27784-28956 bp Ori: AUI23177.1 Feature: domain Description: Transposase_mut Location: 27787-28924 bp Feature: domain Description: Transposase_mut Location: 27787-28924 bp Feature: gene Location: 29321-30799 bp Ori: AUI23178.1 Feature: domain Description: HsdM Location: 29342-30767 bp Feature: domain Description: HsdM Location: 29342-30767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)

Seq: CP023789.1 Enterococcus faecium strain Efaecium_ER04462.3A chromosome, complete genome (2867770 bp)
Overview 1 RT 1: 258308-275613 bp 2 RT 2: 421219-428050 bp 3 RT 3: 2694233-2713881 bp 4 RT 4: 2773125-2777429 bp Neighborhood of RT #1 [258308, 275613] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [421219, 428058] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2694233, 2713881] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2773125, 2777429] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 258308-258691 bp Ori: AUI20494.1 Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: domain Description: DUF961 Location: 2 5832 3-2 5862 3 bp Feature: gene Location: 258720-259865 bp Ori: AUI20495.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 259329-259845 bp Feature: domain Description: FtsK Location: 2 5932 9-2 59845 bp Feature: gene Location: 260580-262439 bp Ori: AUI20496.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 60889-2 61630 bp Feature: domain Description: HNHc Note: nucleases Location: 262185-262323 bp Feature: domain Description: HNHc Note: nucleases Location: 2 62 185-2 62 32 3 bp Feature: gene Location: 262533-262817 bp Feature: gene Location: 262996-264201 bp Ori: AUI20498.1 Feature: domain Description: HTH_XRE Location: 263041-263185 bp Feature: domain Description: HTH_XRE Location: 2 63041-2 63185 bp Feature: domain Description: Rol_Rep_N Location: 263212-263479 bp Feature: domain Description: Rol_Rep_N Location: 2 632 12 -2 63479 bp Feature: domain Description: Rep_trans Location: 263503-264112 bp Feature: domain Description: Rep_trans Location: 2 63503-2 64112 bp Feature: gene Location: 264985-266895 bp Ori: AUI20499.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265318-266056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 65318-2 66056 bp Feature: domain Description: HNHc Note: nucleases Location: 266611-266776 bp Feature: domain Description: HNHc Note: nucleases Location: 2 66611-2 66776 bp Feature: gene Location: 267340-267837 bp Ori: AUI20500.1 Feature: domain Description: ArdA Location: 267358-267823 bp Feature: domain Description: ArdA Location: 2 67358-2 6782 3 bp Feature: gene Location: 267924-268316 bp Ori: AUI20501.1 Feature: domain Description: TcpE Location: 267942-268242 bp Feature: domain Description: TcpE Location: 2 67942 -2 682 42 bp Feature: gene Location: 268300-269853 bp Ori: AUI20502.1 Feature: domain Description: AAA_10 Location: 269632-269818 bp Feature: domain Description: AAA_10 Location: 2 69632 -2 69818 bp Feature: gene Location: 270550-272376 bp Ori: AUI20503.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 70850-2 71549 bp Feature: gene Location: 272510-273427 bp Ori: AUI20504.1 Feature: domain Description: AAA_10 Location: 272513-273395 bp Feature: domain Description: AAA_10 Location: 2 72 513-2 73395 bp Feature: gene Location: 273430-275613 bp Feature: gene Location: 421219-422100 bp Ori: AUI20638.1 Gene: ecsA_1 Feature: domain Description: CcmA Location: 421222-422092 bp Feature: domain Description: CcmA Location: 42 12 2 2 -42 2 092 bp Feature: gene Location: 422354-422953 bp Ori: AUI20639.1 Feature: domain Description: AcrR Location: 422372-422858 bp Feature: domain Description: AcrR Location: 42 2 372 -42 2 858 bp Feature: gene Location: 423440-424828 bp Ori: AUI20640.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761-424376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 3761-42 4376 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: domain Description: GIIM Note: maturase Location: 42 4433-42 4649 bp Feature: gene Location: 424921-426222 bp Ori: AUI20641.1 Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: domain Description: CE4_DAC_u3_5s Location: 42 5590-42 5980 bp Feature: gene Location: 426802-428058 bp Ori: AUI20642.1 Gene: tyrS1 Feature: domain Description: PRK13354 Location: 426805-428050 bp Feature: domain Description: PRK13354 Location: 42 6805-42 8050 bp Feature: gene Location: 2694233-2694568 bp Ori: AUI22794.1 Feature: domain Description: RelB_DinJ Location: 2694437-2694560 bp Feature: domain Description: RelB_DinJ Location: 2 694437-2 694560 bp Feature: gene Location: 2694651-2695796 bp Ori: AUI22795.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2695311-2695776 bp Feature: domain Description: FtsK Location: 2 695311-2 695776 bp Feature: gene Location: 2696511-2698370 bp Ori: AUI22796.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2696820-2697561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 69682 0-2 697561 bp Feature: domain Description: HNHc Note: nucleases Location: 2698116-2698254 bp Feature: domain Description: HNHc Note: nucleases Location: 2 698116-2 6982 54 bp Feature: gene Location: 2698464-2698703 bp Feature: gene Location: 2698781-2699455 bp Ori: AUI22798.1 Feature: domain Description: Zeta_toxin Location: 2698880-2699363 bp Feature: domain Description: Zeta_toxin Location: 2 698880-2 699363 bp Feature: gene Location: 2701369-2702553 bp Ori: AUI22801.1 Feature: domain Description: HTH_XRE Location: 2701399-2701543 bp Feature: domain Description: HTH_XRE Location: 2 701399-2 701543 bp Feature: domain Description: Rol_Rep_N Location: 2701576-2701840 bp Feature: domain Description: Rol_Rep_N Location: 2 701576-2 701840 bp Feature: domain Description: Rep_trans Location: 2701864-2702476 bp Feature: domain Description: Rep_trans Location: 2 701864-2 702 476 bp Feature: gene Location: 2702550-2702687 bp Ori: AUI22802.1 Feature: domain Description: DUF3789 Location: 2702577-2702670 bp Feature: domain Description: DUF3789 Location: 2 702 577-2 702 670 bp Feature: gene Location: 2703433-2705346 bp Ori: AUI22803.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703766-2704507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 703766-2 704507 bp Feature: domain Description: HNHc Note: nucleases Location: 2705062-2705227 bp Feature: domain Description: HNHc Note: nucleases Location: 2 705062 -2 7052 2 7 bp Feature: gene Location: 2705687-2706190 bp Ori: AUI22804.1 Feature: domain Description: ArdA Location: 2705705-2706176 bp Feature: domain Description: ArdA Location: 2 705705-2 706176 bp Feature: gene Location: 2706250-2706639 bp Ori: AUI22805.1 Feature: domain Description: TcpE Location: 2706268-2706568 bp Feature: domain Description: TcpE Location: 2 7062 68-2 706568 bp Feature: gene Location: 2706626-2708176 bp Ori: AUI22806.1 Feature: domain Description: AAA_10 Location: 2707955-2708138 bp Feature: domain Description: AAA_10 Location: 2 707955-2 708138 bp Feature: gene Location: 2708873-2710699 bp Ori: AUI22807.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2709173-2709872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 709173-2 709872 bp Feature: gene Location: 2710833-2711753 bp Ori: AUI22808.1 Feature: domain Description: AAA_10 Location: 2710836-2711718 bp Feature: domain Description: AAA_10 Location: 2 710836-2 711718 bp Feature: gene Location: 2711758-2713881 bp Feature: gene Location: 2773125-2774384 bp Ori: AUI22864.1 Feature: domain Description: PRK09290 Location: 2773131-2774376 bp Feature: domain Description: PRK092 90 Location: 2 773131-2 774376 bp Feature: gene Location: 2774500-2774814 bp Ori: AUI22865.1 Feature: domain Description: AlbA_2 Location: 2774539-2774710 bp Feature: domain Description: AlbA_2 Location: 2 774539-2 774710 bp Feature: gene Location: 2774960-2776486 bp Ori: AUI22866.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2775398-2775854 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 775398-2 775854 bp Feature: gene Location: 2776634-2777113 bp Ori: AUI22867.1 Feature: domain Description: DUF3841 Location: 2776643-2777018 bp Feature: domain Description: DUF3841 Location: 2 776643-2 777018 bp Feature: gene Location: 2777280-2777429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RelB_DinJ (TIGR02384), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326)
RVT-AbiP2, DUF3841 (pfam12952)