myRT

myRT report for GCA_002848705.1_ASM284870v1

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Seq: CP023804.1 Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate chromosome, complete genome (2870397 bp)
Overview 1 RT 1: 258308-275613 bp 2 RT 2: 421219-428050 bp 3 RT 3: 2697002-2716650 bp 4 RT 4: 2774420-2778724 bp Neighborhood of RT #1 [258308, 275613] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [421219, 428058] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2697002, 2716650] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2774420, 2778724] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 258308-258691 bp Ori: AUI29413.1 Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: gene Location: 258720-259865 bp Ori: AUI29414.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 259329-259845 bp Feature: domain Description: FtsK Location: 259329-259845 bp Feature: gene Location: 260580-262439 bp Ori: AUI29415.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261 630 bp Feature: domain Description: HNHc Note: nucleases Location: 262185-262323 bp Feature: domain Description: HNHc Note: nucleases Location: 2621 85-262323 bp Feature: gene Location: 262533-262817 bp Feature: gene Location: 262996-264201 bp Ori: AUI29417.1 Feature: domain Description: HTH_XRE Location: 263041-263185 bp Feature: domain Description: HTH_XRE Location: 263041 -2631 85 bp Feature: domain Description: Rol_Rep_N Location: 263212-263479 bp Feature: domain Description: Rol_Rep_N Location: 26321 2-263479 bp Feature: domain Description: Rep_trans Location: 263503-264112 bp Feature: domain Description: Rep_trans Location: 263503-2641 1 2 bp Feature: gene Location: 264985-266895 bp Ori: AUI29418.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265318-266056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26531 8-266056 bp Feature: domain Description: HNHc Note: nucleases Location: 266611-266776 bp Feature: domain Description: HNHc Note: nucleases Location: 26661 1 -266776 bp Feature: gene Location: 267340-267837 bp Ori: AUI29419.1 Feature: domain Description: ArdA Location: 267358-267823 bp Feature: domain Description: ArdA Location: 267358-267823 bp Feature: gene Location: 267924-268316 bp Ori: AUI29420.1 Feature: domain Description: TcpE Location: 267942-268242 bp Feature: domain Description: TcpE Location: 267942-268242 bp Feature: gene Location: 268300-269853 bp Ori: AUI29421.1 Feature: domain Description: AAA_10 Location: 269632-269818 bp Feature: domain Description: AAA_1 0 Location: 269632-26981 8 bp Feature: gene Location: 270550-272376 bp Ori: AUI29422.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271 549 bp Feature: gene Location: 272510-273427 bp Ori: AUI29423.1 Feature: domain Description: AAA_10 Location: 272513-273395 bp Feature: domain Description: AAA_1 0 Location: 27251 3-273395 bp Feature: gene Location: 273430-275613 bp Feature: gene Location: 421219-422100 bp Ori: AUI29557.1 Gene: ecsA_1 Feature: domain Description: CcmA Location: 421222-422092 bp Feature: domain Description: CcmA Location: 421 222-422092 bp Feature: gene Location: 422354-422953 bp Ori: AUI29558.1 Feature: domain Description: AcrR Location: 422372-422858 bp Feature: domain Description: AcrR Location: 422372-422858 bp Feature: gene Location: 423440-424828 bp Ori: AUI29559.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761-424376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761 -424376 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: gene Location: 424921-426222 bp Ori: AUI29560.1 Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: gene Location: 426802-428058 bp Ori: AUI29561.1 Gene: tyrS1 Feature: domain Description: PRK13354 Location: 426805-428050 bp Feature: domain Description: PRK1 3354 Location: 426805-428050 bp Feature: gene Location: 2697002-2697337 bp Ori: AUI31717.1 Feature: domain Description: RelB_DinJ Location: 2697206-2697329 bp Feature: domain Description: RelB_DinJ Location: 2697206-2697329 bp Feature: gene Location: 2697420-2698565 bp Ori: AUI31718.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2698080-2698545 bp Feature: domain Description: FtsK Location: 2698080-2698545 bp Feature: gene Location: 2699280-2701139 bp Ori: AUI31719.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699589-2700330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699589-2700330 bp Feature: domain Description: HNHc Note: nucleases Location: 2700885-2701023 bp Feature: domain Description: HNHc Note: nucleases Location: 2700885-2701 023 bp Feature: gene Location: 2701233-2701472 bp Feature: gene Location: 2701550-2702224 bp Ori: AUI31721.1 Feature: domain Description: Zeta_toxin Location: 2701649-2702132 bp Feature: domain Description: Zeta_toxin Location: 2701 649-27021 32 bp Feature: gene Location: 2704138-2705322 bp Ori: AUI31724.1 Feature: domain Description: HTH_XRE Location: 2704168-2704312 bp Feature: domain Description: HTH_XRE Location: 27041 68-270431 2 bp Feature: domain Description: Rol_Rep_N Location: 2704345-2704609 bp Feature: domain Description: Rol_Rep_N Location: 2704345-2704609 bp Feature: domain Description: Rep_trans Location: 2704633-2705245 bp Feature: domain Description: Rep_trans Location: 2704633-2705245 bp Feature: gene Location: 2705319-2705456 bp Ori: AUI31725.1 Feature: domain Description: DUF3789 Location: 2705346-2705439 bp Feature: domain Description: DUF3789 Location: 2705346-2705439 bp Feature: gene Location: 2706202-2708115 bp Ori: AUI31726.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706535-2707276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706535-2707276 bp Feature: domain Description: HNHc Note: nucleases Location: 2707831-2707996 bp Feature: domain Description: HNHc Note: nucleases Location: 2707831 -2707996 bp Feature: gene Location: 2708456-2708959 bp Ori: AUI31727.1 Feature: domain Description: ArdA Location: 2708474-2708945 bp Feature: domain Description: ArdA Location: 2708474-2708945 bp Feature: gene Location: 2709019-2709408 bp Ori: AUI31728.1 Feature: domain Description: TcpE Location: 2709037-2709337 bp Feature: domain Description: TcpE Location: 2709037-2709337 bp Feature: gene Location: 2709395-2710945 bp Ori: AUI31729.1 Feature: domain Description: AAA_10 Location: 2710724-2710907 bp Feature: domain Description: AAA_1 0 Location: 271 0724-271 0907 bp Feature: gene Location: 2711642-2713468 bp Ori: AUI31730.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2711942-2712641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 1 942-271 2641 bp Feature: gene Location: 2713602-2714522 bp Ori: AUI31731.1 Feature: domain Description: AAA_10 Location: 2713605-2714487 bp Feature: domain Description: AAA_1 0 Location: 271 3605-271 4487 bp Feature: gene Location: 2714527-2716650 bp Feature: gene Location: 2774420-2775679 bp Ori: AUI31786.1 Feature: domain Description: PRK09290 Location: 2774426-2775671 bp Feature: domain Description: PRK09290 Location: 2774426-2775671 bp Feature: gene Location: 2775795-2776109 bp Ori: AUI31787.1 Feature: domain Description: AlbA_2 Location: 2775834-2776005 bp Feature: domain Description: AlbA_2 Location: 2775834-2776005 bp Feature: gene Location: 2776255-2777781 bp Ori: AUI31788.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2776693-2777149 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2776693-27771 49 bp Feature: gene Location: 2777929-2778408 bp Ori: AUI31789.1 Feature: domain Description: DUF3841 Location: 2777938-2778313 bp Feature: domain Description: DUF3841 Location: 2777938-277831 3 bp Feature: gene Location: 2778575-2778724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RelB_DinJ (TIGR02384), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326)
RVT-AbiP2, DUF3841 (pfam12952)