myRT

myRT report for GCA_002848725.1_ASM284872v1

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Seq: CP023799.1 Enterococcus faecium strain Efaecium_ER04526.5A chromosome, complete genome (2867667 bp)
Overview 1 RT 1: 258308-275613 bp 2 RT 2: 421219-428050 bp 3 RT 3: 2694272-2713920 bp 4 RT 4: 2771690-2775994 bp Neighborhood of RT #1 [258308, 275613] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [421219, 428058] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2694272, 2713920] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2771690, 2775994] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 258308-258691 bp Ori: AUI26438.1 Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: gene Location: 258720-259865 bp Ori: AUI26439.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 259329-259845 bp Feature: domain Description: FtsK Location: 259329-259845 bp Feature: gene Location: 260580-262439 bp Ori: AUI26440.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261 630 bp Feature: domain Description: HNHc Note: nucleases Location: 262185-262323 bp Feature: domain Description: HNHc Note: nucleases Location: 2621 85-262323 bp Feature: gene Location: 262533-262817 bp Feature: gene Location: 262996-264201 bp Ori: AUI26442.1 Feature: domain Description: HTH_XRE Location: 263041-263185 bp Feature: domain Description: HTH_XRE Location: 263041 -2631 85 bp Feature: domain Description: Rol_Rep_N Location: 263212-263479 bp Feature: domain Description: Rol_Rep_N Location: 26321 2-263479 bp Feature: domain Description: Rep_trans Location: 263503-264112 bp Feature: domain Description: Rep_trans Location: 263503-2641 1 2 bp Feature: gene Location: 264985-266895 bp Ori: AUI26443.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265318-266056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26531 8-266056 bp Feature: domain Description: HNHc Note: nucleases Location: 266611-266776 bp Feature: domain Description: HNHc Note: nucleases Location: 26661 1 -266776 bp Feature: gene Location: 267340-267837 bp Ori: AUI26444.1 Feature: domain Description: ArdA Location: 267358-267823 bp Feature: domain Description: ArdA Location: 267358-267823 bp Feature: gene Location: 267924-268316 bp Ori: AUI26445.1 Feature: domain Description: TcpE Location: 267942-268242 bp Feature: domain Description: TcpE Location: 267942-268242 bp Feature: gene Location: 268300-269853 bp Ori: AUI26446.1 Feature: domain Description: AAA_10 Location: 269632-269818 bp Feature: domain Description: AAA_1 0 Location: 269632-26981 8 bp Feature: gene Location: 270550-272376 bp Ori: AUI26447.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271 549 bp Feature: gene Location: 272510-273427 bp Ori: AUI26448.1 Feature: domain Description: AAA_10 Location: 272513-273395 bp Feature: domain Description: AAA_1 0 Location: 27251 3-273395 bp Feature: gene Location: 273430-275613 bp Feature: gene Location: 421219-422100 bp Ori: AUI26582.1 Gene: ecsA_1 Feature: domain Description: CcmA Location: 421222-422092 bp Feature: domain Description: CcmA Location: 421 222-422092 bp Feature: gene Location: 422354-422953 bp Ori: AUI26583.1 Feature: domain Description: AcrR Location: 422372-422858 bp Feature: domain Description: AcrR Location: 422372-422858 bp Feature: gene Location: 423440-424828 bp Ori: AUI26584.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761-424376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423761 -424376 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: domain Description: GIIM Note: maturase Location: 424433-424649 bp Feature: gene Location: 424921-426222 bp Ori: AUI26585.1 Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: domain Description: CE4_DAC_u3_5s Location: 425590-425980 bp Feature: gene Location: 426802-428058 bp Ori: AUI26586.1 Gene: tyrS1 Feature: domain Description: PRK13354 Location: 426805-428050 bp Feature: domain Description: PRK1 3354 Location: 426805-428050 bp Feature: gene Location: 2694272-2694607 bp Ori: AUI28740.1 Feature: domain Description: RelB_DinJ Location: 2694476-2694599 bp Feature: domain Description: RelB_DinJ Location: 2694476-2694599 bp Feature: gene Location: 2694690-2695835 bp Ori: AUI28741.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2695350-2695815 bp Feature: domain Description: FtsK Location: 2695350-269581 5 bp Feature: gene Location: 2696550-2698409 bp Ori: AUI28742.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2696859-2697600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2696859-2697600 bp Feature: domain Description: HNHc Note: nucleases Location: 2698155-2698293 bp Feature: domain Description: HNHc Note: nucleases Location: 26981 55-2698293 bp Feature: gene Location: 2698503-2698742 bp Feature: gene Location: 2698820-2699494 bp Ori: AUI28744.1 Feature: domain Description: Zeta_toxin Location: 2698919-2699402 bp Feature: domain Description: Zeta_toxin Location: 269891 9-2699402 bp Feature: gene Location: 2701408-2702592 bp Ori: AUI28747.1 Feature: domain Description: HTH_XRE Location: 2701438-2701582 bp Feature: domain Description: HTH_XRE Location: 2701 438-2701 582 bp Feature: domain Description: Rol_Rep_N Location: 2701615-2701879 bp Feature: domain Description: Rol_Rep_N Location: 2701 61 5-2701 879 bp Feature: domain Description: Rep_trans Location: 2701903-2702515 bp Feature: domain Description: Rep_trans Location: 2701 903-270251 5 bp Feature: gene Location: 2702589-2702726 bp Ori: AUI28748.1 Feature: domain Description: DUF3789 Location: 2702616-2702709 bp Feature: domain Description: DUF3789 Location: 270261 6-2702709 bp Feature: gene Location: 2703472-2705385 bp Ori: AUI28749.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703805-2704546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703805-2704546 bp Feature: domain Description: HNHc Note: nucleases Location: 2705101-2705266 bp Feature: domain Description: HNHc Note: nucleases Location: 27051 01 -2705266 bp Feature: gene Location: 2705726-2706229 bp Ori: AUI28750.1 Feature: domain Description: ArdA Location: 2705744-2706215 bp Feature: domain Description: ArdA Location: 2705744-270621 5 bp Feature: gene Location: 2706289-2706678 bp Ori: AUI28751.1 Feature: domain Description: TcpE Location: 2706307-2706607 bp Feature: domain Description: TcpE Location: 2706307-2706607 bp Feature: gene Location: 2706665-2708215 bp Ori: AUI28752.1 Feature: domain Description: AAA_10 Location: 2707994-2708177 bp Feature: domain Description: AAA_1 0 Location: 2707994-27081 77 bp Feature: gene Location: 2708912-2710738 bp Ori: AUI28753.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2709212-2709911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270921 2-270991 1 bp Feature: gene Location: 2710872-2711792 bp Ori: AUI28754.1 Feature: domain Description: AAA_10 Location: 2710875-2711757 bp Feature: domain Description: AAA_1 0 Location: 271 0875-271 1 757 bp Feature: gene Location: 2711797-2713920 bp Feature: gene Location: 2771690-2772949 bp Ori: AUI28809.1 Feature: domain Description: PRK09290 Location: 2771696-2772941 bp Feature: domain Description: PRK09290 Location: 2771 696-2772941 bp Feature: gene Location: 2773065-2773379 bp Ori: AUI28810.1 Feature: domain Description: AlbA_2 Location: 2773104-2773275 bp Feature: domain Description: AlbA_2 Location: 27731 04-2773275 bp Feature: gene Location: 2773525-2775051 bp Ori: AUI28811.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2773963-2774419 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2773963-277441 9 bp Feature: gene Location: 2775199-2775678 bp Ori: AUI28812.1 Feature: domain Description: DUF3841 Location: 2775208-2775583 bp Feature: domain Description: DUF3841 Location: 2775208-2775583 bp Feature: gene Location: 2775845-2775994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RelB_DinJ (TIGR02384), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326)
RVT-AbiP2, DUF3841 (pfam12952)

Seq: CP023801.1 Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.2, complete sequence (40911 bp)
Overview 1 RT 1: 24039-30767 bp Neighborhood of RT #1 [24039, 30799] PinE Tra8 RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 24039-24602 bp Ori: AUI29124.1 Gene: hin_3 Feature: domain Description: PinE Location: 24051-24597 bp Feature: domain Description: PinE Location: 2 4051-2 4597 bp Feature: gene Location: 25245-26198 bp Ori: AUI29125.1 Feature: domain Description: Tra8 Location: 25248-26175 bp Feature: domain Description: Tra8 Location: 2 52 48-2 6175 bp Feature: gene Location: 26176-27651 bp Ori: AUI29126.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26524-26989 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 652 4-2 6989 bp Feature: gene Location: 27784-28956 bp Ori: AUI29127.1 Feature: domain Description: Transposase_mut Location: 27787-28924 bp Feature: domain Description: Transposase_mut Location: 2 7787-2 892 4 bp Feature: gene Location: 29321-30799 bp Ori: AUI29128.1 Feature: domain Description: HsdM Location: 29342-30767 bp Feature: domain Description: HsdM Location: 2 9342 -30767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)