myRT

myRT report for GCA_002848745.1_ASM284874v1

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Seq: CP023808.1 Enterococcus faecium strain Efaecium_ER04526.3A chromosome, complete genome (2870954 bp)
Overview 1 RT 1: 258308-275613 bp 2 RT 2: 421218-428049 bp 3 RT 3: 2695668-2715316 bp 4 RT 4: 2774977-2779281 bp Neighborhood of RT #1 [258308, 275613] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [421218, 428057] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2695668, 2715316] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2774977, 2779281] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 258308-258691 bp Ori: AUI32344.1 Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: domain Description: DUF961 Location: 258323-258623 bp Feature: gene Location: 258720-259865 bp Ori: AUI32345.1 Gene: ftsK_1 Feature: domain Description: FtsK Location: 259329-259845 bp Feature: domain Description: FtsK Location: 259329-259845 bp Feature: gene Location: 260580-262439 bp Ori: AUI32346.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260889-261 630 bp Feature: domain Description: HNHc Note: nucleases Location: 262185-262323 bp Feature: domain Description: HNHc Note: nucleases Location: 2621 85-262323 bp Feature: gene Location: 262533-262817 bp Feature: gene Location: 262996-264201 bp Ori: AUI32348.1 Feature: domain Description: HTH_XRE Location: 263041-263185 bp Feature: domain Description: HTH_XRE Location: 263041 -2631 85 bp Feature: domain Description: Rol_Rep_N Location: 263212-263479 bp Feature: domain Description: Rol_Rep_N Location: 26321 2-263479 bp Feature: domain Description: Rep_trans Location: 263503-264112 bp Feature: domain Description: Rep_trans Location: 263503-2641 1 2 bp Feature: gene Location: 264985-266895 bp Ori: AUI32349.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265318-266056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26531 8-266056 bp Feature: domain Description: HNHc Note: nucleases Location: 266611-266776 bp Feature: domain Description: HNHc Note: nucleases Location: 26661 1 -266776 bp Feature: gene Location: 267340-267837 bp Ori: AUI32350.1 Feature: domain Description: ArdA Location: 267358-267823 bp Feature: domain Description: ArdA Location: 267358-267823 bp Feature: gene Location: 267924-268316 bp Ori: AUI32351.1 Feature: domain Description: TcpE Location: 267942-268242 bp Feature: domain Description: TcpE Location: 267942-268242 bp Feature: gene Location: 268300-269853 bp Ori: AUI32352.1 Feature: domain Description: AAA_10 Location: 269632-269818 bp Feature: domain Description: AAA_1 0 Location: 269632-26981 8 bp Feature: gene Location: 270550-272376 bp Ori: AUI32353.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270850-271 549 bp Feature: gene Location: 272510-273427 bp Ori: AUI32354.1 Feature: domain Description: AAA_10 Location: 272513-273395 bp Feature: domain Description: AAA_1 0 Location: 27251 3-273395 bp Feature: gene Location: 273430-275613 bp Feature: gene Location: 421218-422099 bp Ori: AUI32487.1 Gene: ecsA_1 Feature: domain Description: CcmA Location: 421221-422091 bp Feature: domain Description: CcmA Location: 421 221 -422091 bp Feature: gene Location: 422353-422952 bp Ori: AUI32488.1 Feature: domain Description: AcrR Location: 422371-422857 bp Feature: domain Description: AcrR Location: 422371 -422857 bp Feature: gene Location: 423439-424827 bp Ori: AUI32489.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423760-424375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423760-424375 bp Feature: domain Description: GIIM Note: maturase Location: 424432-424648 bp Feature: domain Description: GIIM Note: maturase Location: 424432-424648 bp Feature: gene Location: 424920-426221 bp Ori: AUI32490.1 Feature: domain Description: CE4_DAC_u3_5s Location: 425589-425979 bp Feature: domain Description: CE4_DAC_u3_5s Location: 425589-425979 bp Feature: gene Location: 426801-428057 bp Ori: AUI32491.1 Gene: tyrS1 Feature: domain Description: PRK13354 Location: 426804-428049 bp Feature: domain Description: PRK1 3354 Location: 426804-428049 bp Feature: gene Location: 2695668-2696003 bp Ori: AUI34643.1 Feature: domain Description: RelB_DinJ Location: 2695872-2695995 bp Feature: domain Description: RelB_DinJ Location: 2695872-2695995 bp Feature: gene Location: 2696086-2697231 bp Ori: AUI34644.1 Gene: ftsK_2 Feature: domain Description: FtsK Location: 2696746-2697211 bp Feature: domain Description: FtsK Location: 2696746-269721 1 bp Feature: gene Location: 2697946-2699805 bp Ori: AUI34645.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698255-2698996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698255-2698996 bp Feature: domain Description: HNHc Note: nucleases Location: 2699551-2699689 bp Feature: domain Description: HNHc Note: nucleases Location: 2699551 -2699689 bp Feature: gene Location: 2699899-2700138 bp Feature: gene Location: 2700216-2700890 bp Ori: AUI34647.1 Feature: domain Description: Zeta_toxin Location: 2700315-2700798 bp Feature: domain Description: Zeta_toxin Location: 270031 5-2700798 bp Feature: gene Location: 2702804-2703988 bp Ori: AUI34650.1 Feature: domain Description: HTH_XRE Location: 2702834-2702978 bp Feature: domain Description: HTH_XRE Location: 2702834-2702978 bp Feature: domain Description: Rol_Rep_N Location: 2703011-2703275 bp Feature: domain Description: Rol_Rep_N Location: 270301 1 -2703275 bp Feature: domain Description: Rep_trans Location: 2703299-2703911 bp Feature: domain Description: Rep_trans Location: 2703299-270391 1 bp Feature: gene Location: 2703985-2704122 bp Ori: AUI34651.1 Feature: domain Description: DUF3789 Location: 2704012-2704105 bp Feature: domain Description: DUF3789 Location: 270401 2-27041 05 bp Feature: gene Location: 2704868-2706781 bp Ori: AUI34652.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705201-2705942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705201 -2705942 bp Feature: domain Description: HNHc Note: nucleases Location: 2706497-2706662 bp Feature: domain Description: HNHc Note: nucleases Location: 2706497-2706662 bp Feature: gene Location: 2707122-2707625 bp Ori: AUI34653.1 Feature: domain Description: ArdA Location: 2707140-2707611 bp Feature: domain Description: ArdA Location: 27071 40-270761 1 bp Feature: gene Location: 2707685-2708074 bp Ori: AUI34654.1 Feature: domain Description: TcpE Location: 2707703-2708003 bp Feature: domain Description: TcpE Location: 2707703-2708003 bp Feature: gene Location: 2708061-2709611 bp Ori: AUI34655.1 Feature: domain Description: AAA_10 Location: 2709390-2709573 bp Feature: domain Description: AAA_1 0 Location: 2709390-2709573 bp Feature: gene Location: 2710308-2712134 bp Ori: AUI34656.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2710608-2711307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 0608-271 1 307 bp Feature: gene Location: 2712268-2713188 bp Ori: AUI34657.1 Feature: domain Description: AAA_10 Location: 2712271-2713153 bp Feature: domain Description: AAA_1 0 Location: 271 2271 -271 31 53 bp Feature: gene Location: 2713193-2715316 bp Feature: gene Location: 2774977-2776236 bp Ori: AUI34715.1 Feature: domain Description: PRK09290 Location: 2774983-2776228 bp Feature: domain Description: PRK09290 Location: 2774983-2776228 bp Feature: gene Location: 2776352-2776666 bp Ori: AUI34716.1 Feature: domain Description: AlbA_2 Location: 2776391-2776562 bp Feature: domain Description: AlbA_2 Location: 2776391 -2776562 bp Feature: gene Location: 2776812-2778338 bp Ori: AUI34717.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2777250-2777706 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2777250-2777706 bp Feature: gene Location: 2778486-2778965 bp Ori: AUI34718.1 Feature: domain Description: DUF3841 Location: 2778495-2778870 bp Feature: domain Description: DUF3841 Location: 2778495-2778870 bp Feature: gene Location: 2779132-2779281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), RelB_DinJ (TIGR02384), Zeta_toxin (pfam06414), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326)
RVT-AbiP2, DUF3841 (pfam12952)