myRT

myRT report for GCA_002850055.1_ASM285005v1

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Seq: CP018180.1 Lactobacillus nagelii strain TMW 1.1827 chromosome, complete genome (2406166 bp)
Overview 1 RT 1: 497717-502898 bp 2 RT 2: 640938-645914 bp Neighborhood of RT #1 [497717, 502927] COG3464 RVT-GII Uup ABC_tran_CTD Rex Neighborhood of RT #2 [640938, 645922] MqsR_toxin CxxCG_CxxCG_HTH DUF4065 RVT-GII gltP Feature: gene Location: 497717-498967 bp Ori: AUJ31507.1 Feature: domain Description: COG3464 Location: 497729-498956 bp Feature: domain Description: COG3464 Location: 497729-498956 bp Feature: gene Location: 499219-499449 bp Feature: gene Location: 499613-499909 bp Ori: AUJ31508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499664-499877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499664-499877 bp Feature: gene Location: 500089-502041 bp Ori: AUJ31509.1 Feature: domain Description: Uup Location: 500098-501703 bp Feature: domain Description: Uup Location: 500098-501 703 bp Feature: domain Description: ABC_tran_CTD Location: 501823-502012 bp Feature: domain Description: ABC_tran_CTD Location: 501 823-50201 2 bp Feature: gene Location: 502277-502927 bp Ori: AUJ31510.1 Feature: domain Description: Rex Location: 502289-502898 bp Feature: domain Description: Rex Location: 502289-502898 bp Feature: gene Location: 640938-641258 bp Ori: AUJ31634.1 Feature: domain Description: MqsR_toxin Location: 640977-641244 bp Feature: domain Description: MqsR_toxin Location: 640977-641 244 bp Feature: gene Location: 641239-642249 bp Ori: AUJ31635.1 Feature: domain Description: CxxCG_CxxCG_HTH Location: 641302-641626 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 641 302-641 626 bp Feature: domain Description: DUF4065 Location: 641866-642193 bp Feature: domain Description: DUF4065 Location: 641 866-6421 93 bp Feature: gene Location: 642761-643204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643079-643205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643079-643205 bp Feature: gene Location: 643431-643718 bp Feature: gene Location: 644645-645922 bp Ori: AUJ31637.1 Feature: domain Description: gltP Location: 644666-645914 bp Feature: domain Description: gltP Location: 644666-64591 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-GII, Uup (COG0488), ABC_tran_CTD (pfam16326), Rex (COG2344), MqsR_toxin (pfam15723), CxxCG_CxxCG_HTH (TIGR03830), DUF4065 (pfam13274), gltP (PRK11283)