myRT

myRT report for GCA_002850675.5_ASM285067v5

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Seq: CP025944.4 Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence (89313 bp)
Overview 1 RT 1: 4800-8839 bp 2 RT 2: 12022-15496 bp Neighborhood of RT #1 [4800, 8859] InsE RVT-GII GIIM PHA02517 Rop Neighborhood of RT #2 [12022, 15513] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 4800-5539 bp Feature: domain Description: InsE Location: 4803-5142 bp Feature: domain Description: InsE Location: 4803-51 42 bp Feature: gene Location: 5532-5903 bp Feature: gene Location: 6212-7720 bp Ori: AUS35971.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6470-7202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6470-7202 bp Feature: domain Description: GIIM Note: maturase Location: 7277-7475 bp Feature: domain Description: GIIM Note: maturase Location: 7277-7475 bp Feature: gene Location: 7801-8277 bp Feature: domain Description: PHA02517 Location: 7804-8269 bp Feature: domain Description: PHA0251 7 Location: 7804-8269 bp Feature: gene Location: 8668-8859 bp Ori: AUS35972.1 Feature: domain Description: Rop Location: 8671-8839 bp Feature: domain Description: Rop Location: 8671 -8839 bp Feature: gene Location: 12022-12330 bp Feature: domain Description: Rep_3 Location: 12028-12292 bp Feature: domain Description: Rep_3 Location: 1 2028-1 2292 bp Feature: gene Location: 12340-13037 bp Feature: domain Description: Zn_Tnp_IS1 Location: 12346-12448 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1 2346-1 2448 bp Feature: domain Description: HTH_Tnp_IS1 Location: 12469-12601 bp Feature: domain Description: HTH_Tnp_IS1 Location: 1 2469-1 2601 bp Feature: gene Location: 13189-14673 bp Ori: AUS35976.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13591-14281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3591 -1 4281 bp Feature: gene Location: 14673-14924 bp Feature: gene Location: 15082-15513 bp Ori: AUS35978.1 Gene: umuD Feature: domain Description: PRK10276 Location: 15133-15496 bp Feature: domain Description: PRK1 0276 Location: 1 51 33-1 5496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Rop (pfam01815), Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP025950.4 Escherichia coli strain SCEC020023 chromosome, complete genome (4883746 bp)
Overview 1 RT 1: 517624-521384 bp 2 RT 2: 700866-709881 bp 3 RT 3: 1934195-1938350 bp 4 RT 4: 1940406-1946160 bp 5 RT 5: 3758488-3767264 bp 6 RT 6: 3769959-3773626 bp 7 RT 7: 4236830-4240207 bp 8 RT 8: 4250119-4255320 bp Neighborhood of RT #1 [517624, 521386] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [700866, 710281] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [1934195, 1938382] InsE RVT-GII GIIM PHA02517 YeeP Neighborhood of RT #4 [1940406, 1946160] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Neighborhood of RT #5 [3758488, 3767661] InsE RVT-GII GIIM PHA02517 PRK10945 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [3769959, 3773626] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #7 [4236830, 4240636] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #8 [4250119, 4255427] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 517624-518363 bp Feature: domain Description: InsE Location: 517627-517966 bp Feature: domain Description: InsE Location: 51762 7-517966 bp Feature: gene Location: 518356-518727 bp Feature: gene Location: 519036-520544 bp Ori: AUS36646.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 519294-520026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5192 94-52 002 6 bp Feature: domain Description: GIIM Note: maturase Location: 520101-520299 bp Feature: domain Description: GIIM Note: maturase Location: 52 0101-52 02 99 bp Feature: gene Location: 520634-521107 bp Feature: domain Description: PHA02517 Location: 520640-521105 bp Feature: domain Description: PHA02 517 Location: 52 0640-52 1105 bp Feature: gene Location: 521150-521386 bp Feature: domain Description: DUF1016_N Location: 521207-521384 bp Feature: domain Description: DUF1016_N Location: 52 12 07-52 1384 bp Feature: gene Location: 700866-706601 bp Ori: AUS36807.1 Feature: domain Description: DUF4011 Location: 700956-701790 bp Feature: domain Description: DUF4011 Location: 700956-701790 bp Feature: domain Description: DEXXQc_SF1 Location: 702147-705249 bp Feature: domain Description: DEXXQc_SF1 Location: 702 147-7052 49 bp Feature: domain Description: SF1_C_Upf1 Location: 705258-705786 bp Feature: domain Description: SF1_C_Upf1 Location: 7052 58-705786 bp Feature: domain Description: MTES_1575 Location: 705915-706206 bp Feature: domain Description: MTES_1575 Location: 705915-7062 06 bp Feature: gene Location: 706828-707280 bp Feature: domain Description: PHA02517 Location: 706831-707275 bp Feature: domain Description: PHA02 517 Location: 706831-7072 75 bp Feature: gene Location: 707361-708869 bp Ori: AUS36808.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707619-708351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707619-708351 bp Feature: domain Description: GIIM Note: maturase Location: 708426-708624 bp Feature: domain Description: GIIM Note: maturase Location: 70842 6-70862 4 bp Feature: gene Location: 709178-709549 bp Feature: gene Location: 709542-710281 bp Feature: domain Description: InsE Location: 709545-709881 bp Feature: domain Description: InsE Location: 709545-709881 bp Feature: gene Location: 1934195-1934934 bp Feature: domain Description: InsE Location: 1934198-1934537 bp Feature: domain Description: InsE Location: 1934198-1934537 bp Feature: gene Location: 1934927-1935298 bp Feature: gene Location: 1935607-1937115 bp Ori: AUS37913.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1935865-1936597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1935865-1936597 bp Feature: domain Description: GIIM Note: maturase Location: 1936672-1936870 bp Feature: domain Description: GIIM Note: maturase Location: 1936672 -1936870 bp Feature: gene Location: 1937205-1937678 bp Feature: domain Description: PHA02517 Location: 1937211-1937676 bp Feature: domain Description: PHA02 517 Location: 19372 11-1937676 bp Feature: gene Location: 1937681-1938382 bp Ori: QEE59792.1 Feature: domain Description: YeeP Location: 1937684-1938350 bp Feature: domain Description: YeeP Location: 1937684-1938350 bp Feature: gene Location: 1940406-1940900 bp Ori: AUS37915.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1940550-1940724 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1940550-194072 4 bp Feature: gene Location: 1940920-1941075 bp Feature: gene Location: 1941556-1942656 bp Ori: AUS37916.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1941736-1942270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1941736-1942 2 70 bp Feature: gene Location: 1942771-1945017 bp Ori: AUS37917.2 Feature: domain Description: AAA_15 Location: 1942774-1943782 bp Feature: domain Description: AAA_15 Location: 1942 774-1943782 bp Feature: gene Location: 1945930-1946160 bp Feature: gene Location: 3758488-3759227 bp Feature: domain Description: InsE Location: 3758491-3758830 bp Feature: domain Description: InsE Location: 3758491-3758830 bp Feature: gene Location: 3759220-3759591 bp Feature: gene Location: 3759900-3761408 bp Ori: AUS39577.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3760158-3760890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3760158-3760890 bp Feature: domain Description: GIIM Note: maturase Location: 3760965-3761163 bp Feature: domain Description: GIIM Note: maturase Location: 3760965-3761163 bp Feature: gene Location: 3761498-3761971 bp Feature: domain Description: PHA02517 Location: 3761504-3761969 bp Feature: domain Description: PHA02 517 Location: 3761504-3761969 bp Feature: gene Location: 3762502-3762642 bp Ori: AUS39578.1 Feature: domain Description: PRK10945 Location: 3762505-3762637 bp Feature: domain Description: PRK10945 Location: 3762 505-3762 637 bp Feature: gene Location: 3763724-3764134 bp Feature: gene Location: 3764178-3764651 bp Feature: domain Description: PHA02517 Location: 3764184-3764649 bp Feature: domain Description: PHA02 517 Location: 3764184-3764649 bp Feature: gene Location: 3764741-3766249 bp Ori: AUS39580.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3764999-3765731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3764999-3765731 bp Feature: domain Description: GIIM Note: maturase Location: 3765806-3766004 bp Feature: domain Description: GIIM Note: maturase Location: 3765806-3766004 bp Feature: gene Location: 3766558-3766929 bp Feature: gene Location: 3766922-3767661 bp Feature: domain Description: InsE Location: 3766925-3767264 bp Feature: domain Description: InsE Location: 376692 5-37672 64 bp Feature: gene Location: 3769959-3770698 bp Feature: domain Description: InsE Location: 3769962-3770301 bp Feature: domain Description: InsE Location: 3769962 -3770301 bp Feature: gene Location: 3770691-3771062 bp Feature: gene Location: 3771371-3772879 bp Ori: AUS39585.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3771629-3772361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377162 9-3772 361 bp Feature: domain Description: GIIM Note: maturase Location: 3772436-3772634 bp Feature: domain Description: GIIM Note: maturase Location: 3772 436-3772 634 bp Feature: gene Location: 3772969-3773442 bp Feature: domain Description: PHA02517 Location: 3772975-3773440 bp Feature: domain Description: PHA02 517 Location: 3772 975-3773440 bp Feature: gene Location: 3773408-3773626 bp Feature: gene Location: 4236830-4237087 bp Feature: gene Location: 4237170-4237657 bp Feature: domain Description: PHA02517 Location: 4237173-4237344 bp Feature: domain Description: PHA02 517 Location: 42 37173-42 37344 bp Feature: gene Location: 4237738-4239246 bp Ori: AUS40008.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4237996-4238728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 37996-42 3872 8 bp Feature: domain Description: GIIM Note: maturase Location: 4238803-4239001 bp Feature: domain Description: GIIM Note: maturase Location: 42 38803-42 39001 bp Feature: gene Location: 4239555-4239923 bp Feature: gene Location: 4239919-4240636 bp Feature: domain Description: InsE Location: 4239958-4240207 bp Feature: domain Description: InsE Location: 42 39958-42 402 07 bp Feature: gene Location: 4250119-4251008 bp Feature: gene Location: 4251050-4252152 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4251059-4251311 bp Feature: domain Description: Arm-DNA-bind_3 Location: 42 51059-42 51311 bp Feature: gene Location: 4252607-4253539 bp Ori: AUS40019.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4252709-4253303 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 52 709-42 53303 bp Feature: gene Location: 4253541-4254509 bp Feature: gene Location: 4255155-4255427 bp Ori: AUS40021.1 Feature: domain Description: PRK09678 Location: 4255164-4255320 bp Feature: domain Description: PRK09678 Location: 42 55164-42 5532 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), YeeP (COG3596)
Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), PRK10945 (hemolysin expression modulator Hha), Arm-DNA-bind_3 (pfam13356), PRK09678 (DNA-binding transcriptional regulator; Provisional)