myRT

myRT report for GCA_002852365.2_ASM285236v2

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Seq: CP036302.1 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid p1_015093, complete sequence (205652 bp)
Overview 1 RT 1: 195889-198655 bp Neighborhood of RT #1 [195889, 198669] RVT-GII PRK10276 Feature: gene Location: 195889-196119 bp Feature: gene Location: 196287-196361 bp Feature: gene Location: 196354-197838 bp Ori: QBH41514.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196756-197446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96756-1 97446 bp Feature: gene Location: 197838-198089 bp Feature: gene Location: 198244-198669 bp Ori: QBH41490.1 Gene: umuD Feature: domain Description: PRK10276 Location: 198247-198655 bp Feature: domain Description: PRK1 0276 Location: 1 98247-1 98655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP036300.1 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome (5459441 bp)
Overview 1 RT 1: 1223489-1228374 bp 2 RT 2: 1387531-1390307 bp 3 RT 3: 1847899-1852771 bp 4 RT 4: 1868512-1874774 bp 5 RT 5: 3116899-3121037 bp 6 RT 6: 3268025-3272124 bp 7 RT 7: 3340857-3345119 bp 8 RT 8: 3695532-3698970 bp Neighborhood of RT #1 [1223489, 1228379] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1387531, 1390307] RVT-GII Neighborhood of RT #3 [1847899, 1852785] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1868512, 1874774] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3116899, 3121037] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3268025, 3272135] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3340857, 3345157] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3695532, 3699020] DinI RVT-GII int Feature: gene Location: 1223489-1225873 bp Ori: QBH37014.1 Feature: domain Description: Phage_GPA Location: 1224053-1225019 bp Feature: domain Description: Phage_GPA Location: 12 2 4053-12 2 5019 bp Feature: gene Location: 1226103-1226354 bp Feature: gene Location: 1226354-1227838 bp Ori: QBH40896.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226756-1227446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 6756-12 2 7446 bp Feature: gene Location: 1227946-1228134 bp Feature: gene Location: 1228146-1228379 bp Ori: QBH37017.1 Feature: domain Description: DinI Location: 1228191-1228374 bp Feature: domain Description: DinI Location: 12 2 8191-12 2 8374 bp Feature: gene Location: 1387531-1387734 bp Feature: gene Location: 1387727-1388065 bp Feature: gene Location: 1388162-1389646 bp Ori: QBH40903.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388564-1389254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388564-13892 54 bp Feature: gene Location: 1389646-1389897 bp Feature: gene Location: 1390050-1390307 bp Feature: gene Location: 1847899-1849068 bp Ori: QBH37563.1 Gene: dacD Feature: domain Description: dacD Location: 1847908-1849063 bp Feature: domain Description: dacD Location: 1847908-1849063 bp Feature: gene Location: 1849338-1849589 bp Feature: gene Location: 1849589-1851073 bp Ori: QBH40924.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849991-1850681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849991-1850681 bp Feature: gene Location: 1851155-1851628 bp Ori: QBH37565.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1851158-1851617 bp Feature: domain Description: PRK10016 Location: 1851158-1851617 bp Feature: gene Location: 1851727-1852785 bp Ori: QBH37566.1 Feature: domain Description: YccC Location: 1851733-1852771 bp Feature: domain Description: YccC Location: 1851733-1852 771 bp Feature: gene Location: 1868512-1869615 bp Ori: QBH37585.1 Feature: domain Description: STKc_PknB_like Location: 1868644-1869085 bp Feature: domain Description: STKc_PknB_like Location: 1868644-1869085 bp Feature: gene Location: 1869685-1869927 bp Feature: gene Location: 1870174-1871274 bp Ori: QBH37586.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1870357-1870885 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1870357-1870885 bp Feature: gene Location: 1871389-1873635 bp Ori: QBH37587.1 Feature: domain Description: AAA_15 Location: 1871392-1872400 bp Feature: domain Description: AAA_15 Location: 1871392 -1872 400 bp Feature: gene Location: 1874544-1874774 bp Feature: gene Location: 3116899-3118164 bp Ori: QBH38731.1 Gene: umuC Feature: domain Description: umuC Location: 3116902-3118162 bp Feature: domain Description: umuC Location: 3116902 -3118162 bp Feature: gene Location: 3118166-3118585 bp Ori: QBH38732.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3118169-3118580 bp Feature: domain Description: PRK102 76 Location: 3118169-3118580 bp Feature: gene Location: 3118665-3120149 bp Ori: QBH40997.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119067-3119757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119067-3119757 bp Feature: gene Location: 3120149-3120400 bp Feature: gene Location: 3120948-3121037 bp Feature: gene Location: 3268025-3269290 bp Ori: QBH38880.1 Gene: umuC Feature: domain Description: umuC Location: 3268028-3269288 bp Feature: domain Description: umuC Location: 32 6802 8-32 692 88 bp Feature: gene Location: 3269293-3269712 bp Ori: QBH38881.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3269296-3269707 bp Feature: domain Description: PRK102 76 Location: 32 692 96-32 69707 bp Feature: gene Location: 3269791-3271275 bp Ori: QBH41004.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270193-3270883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 70193-32 70883 bp Feature: gene Location: 3271275-3271526 bp Feature: gene Location: 3271893-3272135 bp Ori: QBH38883.1 Feature: domain Description: DinI Location: 3271944-3272124 bp Feature: domain Description: DinI Location: 32 71944-32 72 12 4 bp Feature: gene Location: 3340857-3341147 bp Feature: gene Location: 3341159-3341392 bp Ori: QBH38954.1 Feature: domain Description: PRK10597 Location: 3341162-3341387 bp Feature: domain Description: PRK10597 Location: 3341162 -3341387 bp Feature: gene Location: 3341471-3342955 bp Ori: QBH41009.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3341873-3342563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3341873-3342 563 bp Feature: gene Location: 3342955-3343206 bp Feature: gene Location: 3343796-3345157 bp Ori: QBH38956.1 Feature: domain Description: PRK05318 Location: 3343820-3345119 bp Feature: domain Description: PRK05318 Location: 334382 0-3345119 bp Feature: gene Location: 3695532-3695837 bp Ori: QBH39280.1 Feature: domain Description: DinI Location: 3695646-3695832 bp Feature: domain Description: DinI Location: 3695646-3695832 bp Feature: gene Location: 3695776-3695964 bp Feature: gene Location: 3696065-3697549 bp Ori: QBH41031.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696467-3697157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696467-3697157 bp Feature: gene Location: 3697549-3697800 bp Feature: gene Location: 3697968-3699020 bp Ori: QBH39282.1 Feature: domain Description: int Location: 3697971-3698970 bp Feature: domain Description: int Location: 3697971-3698970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), int (PHA02601)

Seq: CP036301.1 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid pKPC2_015093, complete sequence (154724 bp)
Overview 1 RT 1: 29246-33467 bp 2 RT 2: 124831-129033 bp Neighborhood of RT #1 [29246, 33467] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [124831, 129050] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 29246-29668 bp Ori: QBH41136.1 Feature: domain Description: DUF1380 Location: 29249-29543 bp Feature: domain Description: DUF13 80 Location: 29249-29543 bp Feature: gene Location: 29665-29856 bp Feature: gene Location: 30170-31837 bp Ori: QBH41138.1 Gene: ltrA Feature: domain Description: RVT_N Location: 30218-30455 bp Feature: domain Description: RVT_N Location: 3 0218-3 0455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30506-31148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0506-3 1148 bp Feature: domain Description: GIIM Note: maturase Location: 31199-31433 bp Feature: domain Description: GIIM Note: maturase Location: 3 1199-3 143 3 bp Feature: domain Description: HNHc Note: nucleases Location: 31643-31802 bp Feature: domain Description: HNHc Note: nucleases Location: 3 1643 -3 1802 bp Feature: gene Location: 32717-32974 bp Feature: gene Location: 33237-33467 bp Feature: gene Location: 124831-125502 bp Ori: QBH41251.1 Feature: domain Description: Plasmid_stab_B Location: 124846-125053 bp Feature: domain Description: Plasmid_stab_B Location: 124846-125053 bp Feature: domain Description: Plasmid_stab_B Location: 125158-125365 bp Feature: domain Description: Plasmid_stab_B Location: 125158-1253 65 bp Feature: gene Location: 125505-126476 bp Ori: QBH41252.1 Feature: domain Description: StbA Location: 125508-126453 bp Feature: domain Description: StbA Location: 125508-126453 bp Feature: gene Location: 126725-128209 bp Ori: QBH41293.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127127-127817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127127-127817 bp Feature: gene Location: 128209-128460 bp Feature: gene Location: 128619-129050 bp Ori: QBH41254.1 Gene: umuD Feature: domain Description: PRK10276 Location: 128670-129033 bp Feature: domain Description: PRK10276 Location: 128670-12903 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Plasmid_stab_B (pfam10784), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)