myRT

myRT report for GCA_002852975.2_ASM285297v2

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Seq: CP029384.1 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 chromosome, complete genome (5468182 bp)
Overview 1 RT 1: 1216763-1221648 bp 2 RT 2: 1382111-1384887 bp 3 RT 3: 1606588-1610985 bp 4 RT 4: 1849941-1854813 bp 5 RT 5: 1870554-1876816 bp 6 RT 6: 3124205-3128343 bp 7 RT 7: 3276597-3280696 bp 8 RT 8: 3349429-3353691 bp 9 RT 9: 3718291-3723129 bp Neighborhood of RT #1 [1216763, 1221653] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1382111, 1384887] RVT-GII Neighborhood of RT #3 [1606588, 1611035] PRK15440 RVT-GII PRK15440 MFS_ExuT_GudP_like Neighborhood of RT #4 [1849941, 1854827] dacD RVT-GII PRK10016 YccC Neighborhood of RT #5 [1870554, 1876816] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #6 [3124205, 3128343] umuC PRK10276 RVT-GII Neighborhood of RT #7 [3276597, 3280707] umuC PRK10276 RVT-GII DinI Neighborhood of RT #8 [3349429, 3353729] PRK10597 RVT-GII PRK05318 Neighborhood of RT #9 [3718291, 3723179] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1216763-1219147 bp Ori: AWL44770.1 Feature: domain Description: Phage_GPA Location: 1217327-1218293 bp Feature: domain Description: Phage_GPA Location: 1 21 7327-1 21 8293 bp Feature: gene Location: 1219377-1219628 bp Feature: gene Location: 1219628-1221112 bp Ori: AWL44772.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1220030-1220720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 220030-1 220720 bp Feature: gene Location: 1221220-1221408 bp Feature: gene Location: 1221420-1221653 bp Ori: AWL44774.1 Feature: domain Description: DinI Location: 1221465-1221648 bp Feature: domain Description: DinI Location: 1 221 465-1 221 648 bp Feature: gene Location: 1382111-1382314 bp Feature: gene Location: 1382307-1382645 bp Feature: gene Location: 1382742-1384226 bp Ori: AWL44933.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1383144-1383834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3831 44-1 383834 bp Feature: gene Location: 1384226-1384477 bp Feature: gene Location: 1384630-1384887 bp Feature: gene Location: 1606588-1606773 bp Ori: AWL45139.1 Feature: domain Description: PRK15440 Location: 1606591-1606738 bp Feature: domain Description: PRK1 5440 Location: 1 606591 -1 606738 bp Feature: gene Location: 1606855-1607106 bp Feature: gene Location: 1607106-1608590 bp Ori: AWL45141.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1607508-1608198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 607508-1 6081 98 bp Feature: gene Location: 1608648-1609703 bp Feature: domain Description: PRK15440 Location: 1608654-1609701 bp Feature: domain Description: PRK1 5440 Location: 1 608654-1 609701 bp Feature: gene Location: 1609746-1611035 bp Ori: AWL45142.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 1609788-1610985 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1 609788-1 61 0985 bp Feature: gene Location: 1849941-1851110 bp Ori: AWL45322.1 Feature: domain Description: dacD Location: 1849950-1851105 bp Feature: domain Description: dacD Location: 1 849950-1 851 1 05 bp Feature: gene Location: 1851380-1851631 bp Feature: gene Location: 1851631-1853115 bp Ori: AWL45324.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1852033-1852723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 852033-1 852723 bp Feature: gene Location: 1853197-1853670 bp Ori: AWL45325.1 Feature: domain Description: PRK10016 Location: 1853200-1853659 bp Feature: domain Description: PRK1 001 6 Location: 1 853200-1 853659 bp Feature: gene Location: 1853769-1854827 bp Ori: AWL45326.1 Feature: domain Description: YccC Location: 1853775-1854813 bp Feature: domain Description: YccC Location: 1 853775-1 85481 3 bp Feature: gene Location: 1870554-1871657 bp Ori: AWL45346.1 Feature: domain Description: STKc_PknB_like Location: 1870686-1871127 bp Feature: domain Description: STKc_PknB_like Location: 1 870686-1 871 1 27 bp Feature: gene Location: 1871727-1871969 bp Feature: gene Location: 1872216-1873316 bp Ori: AWL45347.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1872399-1872927 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 872399-1 872927 bp Feature: gene Location: 1873431-1875707 bp Ori: AWL45348.1 Feature: domain Description: AAA_15 Location: 1873464-1874472 bp Feature: domain Description: AAA_1 5 Location: 1 873464-1 874472 bp Feature: gene Location: 1876586-1876816 bp Feature: gene Location: 3124205-3125470 bp Ori: AWL46529.1 Feature: domain Description: umuC Location: 3124208-3125468 bp Feature: domain Description: umuC Location: 31 24208-31 25468 bp Feature: gene Location: 3125472-3125891 bp Ori: AWL46530.1 Feature: domain Description: PRK10276 Location: 3125475-3125886 bp Feature: domain Description: PRK1 0276 Location: 31 25475-31 25886 bp Feature: gene Location: 3125971-3127455 bp Ori: AWL46531.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3126373-3127063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 26373-31 27063 bp Feature: gene Location: 3127455-3127706 bp Feature: gene Location: 3128254-3128343 bp Feature: gene Location: 3276597-3277862 bp Ori: AWL46679.1 Feature: domain Description: umuC Location: 3276600-3277860 bp Feature: domain Description: umuC Location: 3276600-3277860 bp Feature: gene Location: 3277865-3278284 bp Ori: AWL46680.1 Feature: domain Description: PRK10276 Location: 3277868-3278279 bp Feature: domain Description: PRK1 0276 Location: 3277868-3278279 bp Feature: gene Location: 3278363-3279847 bp Ori: AWL46681.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278765-3279455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3278765-3279455 bp Feature: gene Location: 3279847-3280098 bp Feature: gene Location: 3280465-3280707 bp Ori: AWL46683.1 Feature: domain Description: DinI Location: 3280516-3280696 bp Feature: domain Description: DinI Location: 328051 6-3280696 bp Feature: gene Location: 3349429-3349719 bp Feature: gene Location: 3349731-3349964 bp Ori: AWL46755.1 Feature: domain Description: PRK10597 Location: 3349734-3349959 bp Feature: domain Description: PRK1 0597 Location: 3349734-3349959 bp Feature: gene Location: 3350043-3351527 bp Ori: AWL46756.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3350445-3351135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3350445-3351 1 35 bp Feature: gene Location: 3351527-3351778 bp Feature: gene Location: 3352368-3353729 bp Ori: AWL46758.1 Feature: domain Description: PRK05318 Location: 3352392-3353691 bp Feature: domain Description: PRK0531 8 Location: 3352392-3353691 bp Feature: gene Location: 3718291-3719169 bp Ori: AWL47107.1 Feature: domain Description: Phage_CI_repr Location: 3718318-3718501 bp Feature: domain Description: Phage_CI_repr Location: 371 831 8-371 8501 bp Feature: domain Description: Phage_CI_repr Location: 3718630-3718822 bp Feature: domain Description: Phage_CI_repr Location: 371 8630-371 8822 bp Feature: domain Description: Phage_CI_C Location: 3718849-3719143 bp Feature: domain Description: Phage_CI_C Location: 371 8849-371 91 43 bp Feature: gene Location: 3719181-3720125 bp Feature: gene Location: 3720224-3721708 bp Ori: AWL47109.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3720626-3721316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3720626-3721 31 6 bp Feature: gene Location: 3721708-3721959 bp Feature: gene Location: 3722127-3723179 bp Ori: AWL47111.1 Feature: domain Description: int Location: 3722130-3723129 bp Feature: domain Description: int Location: 37221 30-37231 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), PRK15440 (L-rhamnonate dehydratase; Provisional), MFS_ExuT_GudP_like (cd17319), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP029381.1 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 plasmid pKPC2_020079, complete sequence (146790 bp)
Overview 1 RT 1: 23672-27893 bp 2 RT 2: 108959-113041 bp 3 RT 3: 136979-139858 bp Neighborhood of RT #1 [23672, 27893] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [108959, 113178] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #3 [136979, 139887] PRK13719 RVT-GII PRK13719 TraY Feature: gene Location: 23672-24094 bp Ori: AWL43183.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1380 Location: 2 3675-2 3969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: AWL43185.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 2 4644-2 4881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4932 -2 5574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 2 562 5-2 5859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6069-2 62 2 8 bp Feature: gene Location: 27143-27400 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 108959-109390 bp Ori: AWL43273.1 Feature: domain Description: PRK10276 Location: 109010-109373 bp Feature: domain Description: PRK102 76 Location: 109010-109373 bp Feature: gene Location: 109549-109800 bp Feature: gene Location: 109800-111284 bp Ori: AWL43275.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110202-110892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102 02 -110892 bp Feature: gene Location: 111533-112504 bp Ori: AWL43276.1 Feature: domain Description: StbA Location: 111536-112481 bp Feature: domain Description: StbA Location: 111536-112 481 bp Feature: gene Location: 112507-113178 bp Ori: AWL43277.1 Feature: domain Description: Plasmid_stab_B Location: 112522-112729 bp Feature: domain Description: Plasmid_stab_B Location: 112 52 2 -112 72 9 bp Feature: domain Description: Plasmid_stab_B Location: 112834-113041 bp Feature: domain Description: Plasmid_stab_B Location: 112 834-113041 bp Feature: gene Location: 136979-137287 bp Feature: domain Description: PRK13719 Location: 136985-137276 bp Feature: domain Description: PRK13719 Location: 136985-1372 76 bp Feature: gene Location: 137404-137655 bp Feature: gene Location: 137655-139139 bp Ori: AWL43316.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138057-138747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138057-138747 bp Feature: gene Location: 139198-139566 bp Feature: domain Description: PRK13719 Location: 139204-139519 bp Feature: domain Description: PRK13719 Location: 1392 04-139519 bp Feature: gene Location: 139717-139887 bp Ori: AWL43317.1 Feature: domain Description: TraY Location: 139720-139858 bp Feature: domain Description: TraY Location: 13972 0-139858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784), PRK13719 (conjugal transfer transcriptional regulator TraJ; Provisional), TraY (pfam05509)

Seq: CP029379.1 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 plasmid p1_020079, complete sequence (11970 bp)
Overview 1 RT 1: 199-2576 bp Neighborhood of RT #1 [199, 2576] RVT-GII Feature: gene Location: 199-1683 bp Ori: AWL43140.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601-1291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601-1291 bp Feature: gene Location: 1683-1934 bp Feature: gene Location: 2331-2576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII