myRT

myRT report for GCA_002853435.2_ASM285343v2

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Seq: CP028548.1 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 chromosome, complete genome (5492984 bp)
Overview 1 RT 1: 1231934-1236819 bp 2 RT 2: 1397176-1399952 bp 3 RT 3: 1848526-1853398 bp 4 RT 4: 1869139-1875401 bp 5 RT 5: 3087339-3091477 bp 6 RT 6: 3238459-3242558 bp 7 RT 7: 3312491-3316753 bp 8 RT 8: 3637243-3642081 bp Neighborhood of RT #1 [1231934, 1236824] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1397176, 1399952] RVT-GII Neighborhood of RT #3 [1848526, 1853412] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1869139, 1875401] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3087339, 3091477] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3238459, 3242569] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3312491, 3316791] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3637243, 3642131] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1231934-1234318 bp Ori: AVZ88631.1 Feature: domain Description: Phage_GPA Location: 1232498-1233464 bp Feature: domain Description: Phage_GPA Location: 1 232498-1 233464 bp Feature: gene Location: 1234548-1234799 bp Feature: gene Location: 1234799-1236283 bp Ori: AVZ88633.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1235201-1235891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 235201 -1 235891 bp Feature: gene Location: 1236391-1236579 bp Feature: gene Location: 1236591-1236824 bp Ori: AVZ88635.1 Feature: domain Description: DinI Location: 1236636-1236819 bp Feature: domain Description: DinI Location: 1 236636-1 23681 9 bp Feature: gene Location: 1397176-1397379 bp Feature: gene Location: 1397372-1397710 bp Feature: gene Location: 1397807-1399291 bp Ori: AVZ88793.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1398209-1398899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 398209-1 398899 bp Feature: gene Location: 1399291-1399542 bp Feature: gene Location: 1399695-1399952 bp Feature: gene Location: 1848526-1849695 bp Ori: AVZ89174.1 Feature: domain Description: dacD Location: 1848535-1849690 bp Feature: domain Description: dacD Location: 1 848535-1 849690 bp Feature: gene Location: 1849965-1850216 bp Feature: gene Location: 1850216-1851700 bp Ori: AVZ89176.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850618-1851308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85061 8-1 851 308 bp Feature: gene Location: 1851782-1852255 bp Ori: AVZ89177.1 Feature: domain Description: PRK10016 Location: 1851785-1852244 bp Feature: domain Description: PRK1 001 6 Location: 1 851 785-1 852244 bp Feature: gene Location: 1852354-1853412 bp Ori: AVZ89178.1 Feature: domain Description: YccC Location: 1852360-1853398 bp Feature: domain Description: YccC Location: 1 852360-1 853398 bp Feature: gene Location: 1869139-1870242 bp Ori: AVZ89198.1 Feature: domain Description: STKc_PknB_like Location: 1869271-1869712 bp Feature: domain Description: STKc_PknB_like Location: 1 869271 -1 86971 2 bp Feature: gene Location: 1870312-1870554 bp Feature: gene Location: 1870801-1871901 bp Ori: AVZ89199.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1870984-1871512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 870984-1 871 51 2 bp Feature: gene Location: 1872016-1874292 bp Ori: AVZ89200.1 Feature: domain Description: AAA_15 Location: 1872049-1873057 bp Feature: domain Description: AAA_1 5 Location: 1 872049-1 873057 bp Feature: gene Location: 1875171-1875401 bp Feature: gene Location: 3087339-3088604 bp Ori: AVZ90328.1 Feature: domain Description: umuC Location: 3087342-3088602 bp Feature: domain Description: umuC Location: 3087342-3088602 bp Feature: gene Location: 3088606-3089025 bp Ori: AVZ90329.1 Feature: domain Description: PRK10276 Location: 3088609-3089020 bp Feature: domain Description: PRK1 0276 Location: 3088609-3089020 bp Feature: gene Location: 3089105-3090589 bp Ori: AVZ90330.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3089507-3090197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3089507-30901 97 bp Feature: gene Location: 3090589-3090840 bp Feature: gene Location: 3091388-3091477 bp Feature: gene Location: 3238459-3239724 bp Ori: AVZ90477.1 Feature: domain Description: umuC Location: 3238462-3239722 bp Feature: domain Description: umuC Location: 3238462-3239722 bp Feature: gene Location: 3239727-3240146 bp Ori: AVZ90478.1 Feature: domain Description: PRK10276 Location: 3239730-3240141 bp Feature: domain Description: PRK1 0276 Location: 3239730-32401 41 bp Feature: gene Location: 3240225-3241709 bp Ori: AVZ90479.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240627-3241317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240627-3241 31 7 bp Feature: gene Location: 3241709-3241960 bp Feature: gene Location: 3242327-3242569 bp Ori: AVZ90481.1 Feature: domain Description: DinI Location: 3242378-3242558 bp Feature: domain Description: DinI Location: 3242378-3242558 bp Feature: gene Location: 3312491-3312781 bp Feature: gene Location: 3312793-3313026 bp Ori: AVZ90555.1 Feature: domain Description: PRK10597 Location: 3312796-3313021 bp Feature: domain Description: PRK1 0597 Location: 331 2796-331 3021 bp Feature: gene Location: 3313105-3314589 bp Ori: AVZ90556.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3313507-3314197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 3507-331 41 97 bp Feature: gene Location: 3314589-3314840 bp Feature: gene Location: 3315430-3316791 bp Ori: AVZ90558.1 Feature: domain Description: PRK05318 Location: 3315454-3316753 bp Feature: domain Description: PRK0531 8 Location: 331 5454-331 6753 bp Feature: gene Location: 3637243-3638121 bp Ori: AVZ90856.1 Feature: domain Description: Phage_CI_repr Location: 3637270-3637453 bp Feature: domain Description: Phage_CI_repr Location: 3637270-3637453 bp Feature: domain Description: Phage_CI_repr Location: 3637582-3637774 bp Feature: domain Description: Phage_CI_repr Location: 3637582-3637774 bp Feature: domain Description: Phage_CI_C Location: 3637801-3638095 bp Feature: domain Description: Phage_CI_C Location: 3637801 -3638095 bp Feature: gene Location: 3638133-3639077 bp Feature: gene Location: 3639176-3640660 bp Ori: AVZ90858.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639578-3640268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639578-3640268 bp Feature: gene Location: 3640660-3640911 bp Feature: gene Location: 3641079-3642131 bp Ori: AVZ90860.1 Feature: domain Description: int Location: 3641082-3642081 bp Feature: domain Description: int Location: 3641 082-3642081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP028543.1 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 plasmid p1_020143, complete sequence (159355 bp)
Overview 1 RT 1: 149128-152230 bp Neighborhood of RT #1 [149128, 152244] RVT-GII PRK10276 Feature: gene Location: 149128-149406 bp Feature: gene Location: 149465-149695 bp Feature: gene Location: 149929-151413 bp Ori: AVZ87192.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150331-151021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150331-15102 1 bp Feature: gene Location: 151413-151664 bp Feature: gene Location: 151819-152244 bp Ori: AVZ87194.1 Feature: domain Description: PRK10276 Location: 151822-152230 bp Feature: domain Description: PRK102 76 Location: 15182 2 -152 2 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)