myRT

myRT report for GCA_002860105.1_ASM286010v1

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Seq: CP019071.1 Escherichia coli strain CRE1493 chromosome, complete genome (4877335 bp)
Overview 1 RT 1: 516507-519532 bp 2 RT 2: 821683-825974 bp 3 RT 3: 2774286-2777083 bp 4 RT 4: 3728049-3731068 bp 5 RT 5: 4179725-4182821 bp 6 RT 6: 4195406-4202466 bp Neighborhood of RT #1 [516507, 519537] RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [821683, 825974] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2774286, 2777083] RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3728049, 3731125] RVT-GII GIIM PHA02517 SH3_2 SH3_2 Neighborhood of RT #5 [4179725, 4182821] COG2085 PHA02517 RVT-GII GIIM Neighborhood of RT #6 [4195406, 4202573] RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 516507-516758 bp Feature: gene Location: 516793-517218 bp Feature: gene Location: 517172-518695 bp Ori: AUL61922.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517445-518177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7445-51 81 77 bp Feature: domain Description: GIIM Note: maturase Location: 518252-518450 bp Feature: domain Description: GIIM Note: maturase Location: 51 8252-51 8450 bp Feature: gene Location: 518770-519258 bp Ori: AUL61923.1 Feature: domain Description: PHA02517 Location: 518779-519256 bp Feature: domain Description: PHA0251 7 Location: 51 8779-51 9256 bp Feature: gene Location: 519298-519537 bp Ori: AUL61924.1 Feature: domain Description: DUF1016_N Location: 519355-519532 bp Feature: domain Description: DUF1 01 6_N Location: 51 9355-51 9532 bp Feature: gene Location: 821683-822912 bp Ori: AUL62227.1 Feature: domain Description: YesM Location: 822163-822904 bp Feature: domain Description: YesM Location: 8221 63-822904 bp Feature: gene Location: 822985-823173 bp Feature: gene Location: 823495-824016 bp Ori: AUL62229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823501-823783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823501 -823783 bp Feature: domain Description: GIIM Note: maturase Location: 823831-824011 bp Feature: domain Description: GIIM Note: maturase Location: 823831 -82401 1 bp Feature: gene Location: 824044-824583 bp Ori: AUL62230.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824374-824452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824374-824452 bp Feature: gene Location: 824808-825095 bp Feature: gene Location: 825069-825974 bp Feature: gene Location: 2774286-2774537 bp Feature: gene Location: 2774572-2774997 bp Feature: gene Location: 2774951-2776474 bp Ori: AUL64019.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2775224-2775956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2775224-2775956 bp Feature: domain Description: GIIM Note: maturase Location: 2776031-2776229 bp Feature: domain Description: GIIM Note: maturase Location: 2776031 -2776229 bp Feature: gene Location: 2776558-2777037 bp Feature: domain Description: PHA02517 Location: 2776561-2777035 bp Feature: domain Description: PHA0251 7 Location: 2776561 -2777035 bp Feature: gene Location: 2777003-2777083 bp Feature: gene Location: 3728049-3728300 bp Feature: gene Location: 3728335-3728760 bp Feature: gene Location: 3728714-3730237 bp Ori: AUL64936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3728987-3729719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3728987-372971 9 bp Feature: domain Description: GIIM Note: maturase Location: 3729794-3729992 bp Feature: domain Description: GIIM Note: maturase Location: 3729794-3729992 bp Feature: gene Location: 3730312-3730800 bp Ori: AUL64937.1 Feature: domain Description: PHA02517 Location: 3730321-3730798 bp Feature: domain Description: PHA0251 7 Location: 3730321 -3730798 bp Feature: gene Location: 3730843-3731125 bp Feature: domain Description: SH3_2 Location: 3730858-3730921 bp Feature: domain Description: SH3_2 Location: 3730858-3730921 bp Feature: domain Description: SH3_2 Location: 3730951-3731068 bp Feature: domain Description: SH3_2 Location: 3730951 -3731 068 bp Feature: gene Location: 4179725-4180138 bp Ori: AUL65356.1 Feature: domain Description: COG2085 Location: 4179824-4179971 bp Feature: domain Description: COG2085 Location: 41 79824-41 79971 bp Feature: gene Location: 4180065-4180558 bp Feature: domain Description: PHA02517 Location: 4180074-4180245 bp Feature: domain Description: PHA0251 7 Location: 41 80074-41 80245 bp Feature: gene Location: 4180633-4182156 bp Ori: AUL65357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180906-4181638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 80906-41 81 638 bp Feature: domain Description: GIIM Note: maturase Location: 4181713-4181911 bp Feature: domain Description: GIIM Note: maturase Location: 41 81 71 3-41 81 91 1 bp Feature: gene Location: 4182110-4182535 bp Feature: gene Location: 4182570-4182821 bp Feature: gene Location: 4195406-4195654 bp Feature: gene Location: 4195689-4196114 bp Feature: gene Location: 4196068-4197591 bp Ori: AUL65378.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4196341-4197073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 96341 -41 97073 bp Feature: domain Description: GIIM Note: maturase Location: 4197148-4197346 bp Feature: domain Description: GIIM Note: maturase Location: 41 971 48-41 97346 bp Feature: gene Location: 4197666-4198154 bp Ori: AUL65379.1 Feature: domain Description: PHA02517 Location: 4197675-4198152 bp Feature: domain Description: PHA0251 7 Location: 41 97675-41 981 52 bp Feature: gene Location: 4198385-4199298 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4198394-4198646 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 98394-41 98646 bp Feature: gene Location: 4199312-4199497 bp Feature: gene Location: 4199753-4200685 bp Ori: AUL65381.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4199855-4200449 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 99855-4200449 bp Feature: gene Location: 4200687-4201655 bp Feature: gene Location: 4202301-4202573 bp Ori: AUL65383.1 Feature: domain Description: PRK09678 Location: 4202310-4202466 bp Feature: domain Description: PRK09678 Location: 420231 0-4202466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), SH3_2 (pfam07653), COG2085 (Predicted dinucleotide-binding enzyme ), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)